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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_24925 and AO353_24930 overlap by 4 nucleotides
AO353_24930 and AO353_24935 overlap by 4 nucleotides
AO353_24935 and AO353_24940 overlap by 4 nucleotides
AO353_24940 and AO353_24945 are separated by 303 nucleotides
AO353_24925: AO353_24925 - ABC transporter ATP-binding protein, at 5,497,720 to 5,498,484
_24925
AO353_24930: AO353_24930 - Fe-S cluster assembly protein SufD, at 5,498,481 to 5,499,791
_24930
AO353_24935: AO353_24935 - cysteine sulfinate desulfinase, at 5,499,788 to 5,501,062
_24935
AO353_24940: AO353_24940 - nitrogen fixation protein NifU, at 5,501,059 to 5,501,517
_24940
AO353_24945: AO353_24945 - hypothetical protein, at 5,501,821 to 5,502,357
_24945
Group
Condition
AO353
_24925
AO353
_24930
AO353
_24935
AO353
_24940
AO353
_24945
carbon source
Ethanol (C)
-1.2
+0.3
-0.7
-0.1
-0.1
carbon source
D-Fructose (C)
-0.1
-0.2
-0.3
-0.7
-0.4
stress
Chloramphenicol 0.0025 mg/ml
-0.5
-0.2
-0.7
-0.1
-0.1
carbon source
L-Phenylalanine (C)
-0.3
-0.5
-0.1
+0.2
-0.7
carbon source
D-Trehalose (C)
-0.4
-0.2
-0.6
+0.1
-0.3
stress
Spectinomycin 0.2 mg/ml
-0.4
-0.4
-0.2
+0.2
-0.5
motility
outer cut, LB soft agar motility assay
+0.3
-0.6
-0.9
-0.3
+0.2
carbon source
L-Citrulline
-1.2
+0.4
-0.3
-0.1
-0.1
stress
Spectinomycin 0.15 mg/ml
-0.6
-0.6
-0.3
+0.1
+0.1
carbon source
L-Serine (C)
+0.2
-0.1
-0.6
-0.4
-0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.0
-0.4
-0.4
+0.6
-0.7
motility
outer cut, LB soft agar motility assay
-0.8
-0.6
-0.4
+0.5
+0.6
carbon source
L-Citrulline
-0.4
+0.1
-0.3
+0.3
-0.5
carbon source
D-Glucose
+0.1
-0.7
+0.2
+0.2
-0.5
nitrogen source
Parabanic Acid (N)
-0.4
-0.2
-0.1
-0.2
+0.5
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.5
-0.8
+0.2
+0.0
-0.4
carbon source
Trisodium citrate (C)
-0.2
+0.2
-0.5
-0.3
+0.4
carbon source
propionate (C)
-0.4
+0.2
-0.1
-0.4
+0.4
nitrogen source
Urea (N)
-0.4
+0.4
-0.5
+0.0
+0.3
carbon source
acetate (C)
-0.5
+0.5
-0.2
+0.1
-0.2
carbon source
L-Ornithine
-0.4
+0.2
-0.5
+0.0
+0.5
lb
LB
+0.4
+0.4
-0.1
-0.3
-0.4
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
+0.4
-0.1
-0.5
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
+0.7
-0.0
-0.6
-0.2
carbon source
acetate (C)
-0.1
+0.7
-0.2
-0.2
+0.3
motility
outer cut, LB soft agar motility assay
+0.7
-0.2
-0.6
+0.4
+0.3
stress
Nickel (II) chloride 0.625 mM
+0.3
-0.2
-0.2
+0.5
+0.4
stress
Thallium(I) acetate 0.016 mg/ml
+0.7
+0.6
+0.2
-0.2
-0.1
stress
Lomefloxacin 0.001 mM
+0.4
+0.1
-0.1
+0.4
+0.5
carbon source
L-Citrulline
-0.0
+0.7
+0.0
+0.0
+0.8
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