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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_24795 and AO353_24800 are separated by 217 nucleotides
AO353_24800 and AO353_24805 are separated by 141 nucleotides
AO353_24805 and AO353_24810 are separated by 92 nucleotides
AO353_24810 and AO353_24815 are separated by 5 nucleotides
AO353_24795: AO353_24795 - oxidoreductase, at 5,465,303 to 5,467,264
_24795
AO353_24800: AO353_24800 - spermidine/putrescine ABC transporter substrate-binding protein, at 5,467,482 to 5,468,531
_24800
AO353_24805: AO353_24805 - TetR family transcriptional regulator, at 5,468,673 to 5,469,320
_24805
AO353_24810: AO353_24810 - transcriptional regulator, at 5,469,413 to 5,470,129
_24810
AO353_24815: AO353_24815 - amino acid ABC transporter substrate-binding protein, at 5,470,135 to 5,470,908
_24815
Group
Condition
AO353
_24795
AO353
_24800
AO353
_24805
AO353
_24810
AO353
_24815
carbon source
L-Ornithine
-0.6
-0.5
-1.2
-0.6
-0.5
carbon source
L-Citrulline
-0.5
-0.4
-1.0
-0.1
-1.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
-0.1
-1.3
+0.4
-1.2
carbon source
L-Citrulline (C)
-0.1
-0.0
-2.0
-0.3
+0.2
carbon source
L-Ornithine
-0.6
+0.1
-1.7
+0.0
+0.2
carbon source
L-Ornithine
-0.6
+0.1
-1.1
-0.6
+0.3
carbon source
L-Valine (C)
-0.0
-0.0
-0.6
-1.1
-0.1
carbon source
L-Phenylalanine (C)
-0.2
-0.1
-0.3
-0.3
-0.8
motility
outer cut, LB soft agar motility assay
+0.0
-0.5
+0.2
-0.5
-1.1
carbon source
Uridine (C)
-0.2
+0.0
-1.2
-0.3
-0.1
stress
Doxycycline hyclate 0.0002 mg/ml
-0.1
-0.1
+0.1
-0.7
-0.8
carbon source
D-Alanine (C)
-0.2
-0.0
-0.5
-0.3
-0.5
carbon source
L-Citrulline
-0.5
-0.3
-0.6
-0.2
+0.0
carbon source
L-Citrulline
+0.1
+0.0
-0.6
-0.5
-0.5
motility
outer cut, LB soft agar motility assay
+0.3
+0.0
-1.1
-0.0
-0.4
motility
outer cut, LB soft agar motility assay
-0.2
-0.3
-0.3
+0.3
-0.7
carbon source
L-Leucine (C)
-0.4
+0.3
-0.7
+0.1
-0.4
pH
Minimal media pH9
-0.2
-0.4
-0.1
+0.2
-0.6
stress
Cisplatin 0.006 mg/ml
+0.0
-0.6
-0.4
-0.3
+0.5
carbon source
Putrescine (C)
+0.1
+0.1
-0.5
-0.7
+0.3
pH
Minimal media pH9
+0.1
+0.2
+0.2
-0.5
-0.6
stress
Cisplatin 0.006 mg/ml
+0.3
-0.3
-0.2
+0.7
-0.1
carbon source
L-Ornithine
-0.5
-0.1
-0.7
+1.2
+0.5
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
-0.4
-0.6
+0.2
+0.7
carbon source
L-Arginine (C)
-0.1
-0.0
-0.5
+0.4
+0.6
stress
Cobalt chloride 0.32 mM
+0.1
-0.5
+0.2
+0.8
-0.1
carbon source
pyruvate (C)
+0.2
+0.3
-0.3
+0.4
+0.3
carbon source
Tween 20 (C)
-0.1
+0.3
-0.1
+0.3
+0.7
nitrogen source
L-Lysine (N)
-0.0
+0.1
+2.3
+0.4
-0.2
nitrogen source
L-Lysine (N)
-0.1
+0.1
+2.4
+0.1
+0.3
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