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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_24695 and AO353_24700 are separated by 215 nucleotides
AO353_24700 and AO353_24705 overlap by 4 nucleotides
AO353_24705 and AO353_24710 are separated by 2 nucleotides
AO353_24710 and AO353_24715 are separated by 69 nucleotides
AO353_24695: AO353_24695 - hypothetical protein, at 5,437,126 to 5,437,512
_24695
AO353_24700: AO353_24700 - peptidase, at 5,437,728 to 5,439,521
_24700
AO353_24705: AO353_24705 - hemolysin D, at 5,439,518 to 5,440,852
_24705
AO353_24710: AO353_24710 - peptidase, at 5,440,855 to 5,442,219
_24710
AO353_24715: AO353_24715 - hypothetical protein, at 5,442,289 to 5,445,255
_24715
Group
Condition
AO353
_24695
AO353
_24700
AO353
_24705
AO353
_24710
AO353
_24715
carbon source
L-Valine (C)
+0.1
-1.9
+0.0
-0.1
-0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.4
-0.5
-0.5
-0.3
-0.0
carbon source
L-Citrulline
-0.2
-0.6
-0.6
-0.0
+0.0
stress
copper (II) chloride 2.5 mM
+0.1
-0.6
-0.5
-0.3
-0.1
carbon source
L-Alanine (C)
+0.0
-0.6
-0.5
+0.0
-0.2
stress
methylglyoxal 0.009 vol%
+0.3
-0.4
-0.7
-0.2
+0.0
nitrogen source
Thymine (N)
-0.2
-1.0
+0.1
+0.2
+0.0
stress
Fusidic 0.125 mg/ml
-0.0
-0.4
-0.5
+0.2
-0.1
carbon source
L-Citrulline
-0.2
+0.3
-1.2
+0.1
+0.2
carbon source
Tween 20 (C)
-0.3
-0.5
+0.2
-0.1
-0.1
carbon source
D-Glucose
-0.0
-0.8
-0.2
+0.3
+0.2
carbon source
pyruvate (C)
+0.2
-0.8
+0.2
-0.2
-0.0
lb
LB
+0.3
-0.8
-0.0
+0.1
+0.1
stress
Sisomicin 0.008 mg/ml
+0.1
-0.8
-0.1
-0.0
+0.5
survival
4C survival; 672 hrs
-0.0
-0.7
-0.1
+0.1
+0.4
carbon source
L-Tryptophan (C)
+0.1
-0.8
+0.2
+0.1
+0.1
carbon source
Ethanol (C)
-0.4
+0.4
-0.3
+0.1
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.6
-0.3
-0.2
-0.1
-0.0
carbon source
L-Ornithine
-0.2
+0.5
-0.1
+0.3
-0.2
stress
nitrate 200 mM
+0.3
+0.4
-0.4
+0.2
-0.2
carbon source
L-Ornithine
-0.1
+0.3
-0.3
+0.4
+0.1
pH
Minimal media pH9
-0.0
-0.5
+0.9
+0.1
+0.0
lb
LB
-0.1
+0.8
-0.2
-0.0
+0.0
motility
outer cut, LB soft agar motility assay
+0.2
+0.3
-0.0
+0.5
-0.3
nitrogen source
Parabanic Acid (N)
+0.2
+0.6
+0.1
-0.2
+0.1
carbon source
acetate (C)
+0.5
-0.4
+0.4
+0.1
+0.2
nitrogen source
L-Glutamic (N)
-0.1
+0.7
+0.3
+0.0
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
+0.7
-0.2
+0.1
+0.2
carbon source
L-Citrulline
+0.1
+0.8
-0.1
+0.2
+0.2
stress
Nalidixic 0.004 mg/ml
+0.2
+0.3
+0.5
+0.1
+0.1
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