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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_24190 and AO353_24195 are separated by 120 nucleotides
AO353_24195 and AO353_24200 are separated by 125 nucleotides
AO353_24200 and AO353_24205 overlap by 4 nucleotides
AO353_24205 and AO353_24210 overlap by 1 nucleotides
AO353_24190: AO353_24190 - hypothetical protein, at 5,320,974 to 5,321,231
_24190
AO353_24195: AO353_24195 - hypothetical protein, at 5,321,352 to 5,321,780
_24195
AO353_24200: AO353_24200 - serine--tRNA ligase, at 5,321,906 to 5,323,186
_24200
AO353_24205: AO353_24205 - hypothetical protein, at 5,323,183 to 5,323,578
_24205
AO353_24210: AO353_24210 - hypothetical protein, at 5,323,578 to 5,323,802
_24210
Group
Condition
AO353
_24190
AO353
_24195
AO353
_24200
AO353
_24205
AO353
_24210
anaerobic
Anaerobic, acetate donor; nitrate and iron
-1.3
-0.1
-0.5
+0.1
N.D.
carbon source
L-Alanine (C)
-1.0
+0.3
+0.2
-1.2
N.D.
stress
Lomefloxacin 0.001 mM
-1.0
-0.4
+0.3
-0.5
N.D.
stress
Choline chloride 268.5 mM
-1.0
-0.1
-0.1
-0.2
N.D.
stress
Cisplatin 0.006 mg/ml
-1.7
-0.1
+0.2
+0.3
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.6
-0.5
-0.5
+0.4
N.D.
stress
Cisplatin 0.006 mg/ml
-1.1
-0.5
+0.4
+0.2
N.D.
carbon source
D-Glucose
-1.2
-0.3
+0.3
+0.0
N.D.
stress
methylglyoxal 0.009 vol%
-0.6
+0.1
-0.7
+0.2
N.D.
stress
sodium fluoride 6.25 mM
-0.7
-0.4
+0.3
-0.1
N.D.
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.4
-0.4
-0.6
-0.4
N.D.
carbon source
L-Isoleucine (C)
-1.1
+0.2
+0.3
-0.3
N.D.
carbon source
Putrescine (C)
-0.8
+0.4
-0.3
-0.1
N.D.
stress
Cobalt chloride 0.32 mM
-1.2
+0.2
+0.2
+0.1
N.D.
survival
4C survival; 360 hrs
-0.9
-0.2
+0.0
+0.4
N.D.
carbon source
L-Ornithine
-1.2
+0.3
+0.2
-0.1
N.D.
carbon source
L-Citrulline
-1.2
+0.0
+0.4
+0.1
N.D.
carbon source
L-Citrulline
-0.9
-0.1
+0.5
-0.2
N.D.
pH
Minimal media pH9
-0.6
-0.3
-0.3
+0.7
N.D.
stress
Sisomicin 0.008 mg/ml
-1.4
+0.3
+0.5
+0.3
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
-0.7
+0.2
+0.4
-0.2
N.D.
carbon source
casaminos (C)
-0.7
+0.3
+0.3
-0.1
N.D.
carbon source
L-Ornithine
-0.8
+0.1
+0.2
+0.4
N.D.
carbon source
propionate (C)
-0.7
+0.1
+0.4
+0.2
N.D.
nitrogen source
nitrite (N)
-0.5
+0.3
+0.4
-0.1
N.D.
denitrifying
Nitrate reduction, replicate C
+0.4
+0.6
-0.6
+0.3
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
+0.5
+0.1
+0.5
-0.3
N.D.
motility
outer cut, LB soft agar motility assay
+1.2
+0.2
-0.0
-0.2
N.D.
motility
outer cut, LB soft agar motility assay
-0.0
+0.0
+0.9
+0.4
N.D.
carbon source
L-Citrulline
+1.0
+0.4
+0.0
+0.3
N.D.
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