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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_24045 and AO353_24050 overlap by 4 nucleotides
AO353_24050 and AO353_24055 are separated by 227 nucleotides
AO353_24055 and AO353_24060 are separated by 503 nucleotides
AO353_24060 and AO353_24065 are separated by 198 nucleotides
AO353_24045: AO353_24045 - iron ABC transporter ATP-binding protein, at 5,288,710 to 5,289,492
_24045
AO353_24050: AO353_24050 - ferric anguibactin-binding protein, at 5,289,489 to 5,290,472
_24050
AO353_24055: AO353_24055 - ligand-gated channel protein, at 5,290,700 to 5,292,970
_24055
AO353_24060: AO353_24060 - AcrR family transcriptional regulator, at 5,293,474 to 5,294,100
_24060
AO353_24065: AO353_24065 - Long-chain fatty acid transport protein, at 5,294,299 to 5,295,570
_24065
Group
Condition
AO353
_24045
AO353
_24050
AO353
_24055
AO353
_24060
AO353
_24065
survival
4C survival; 672 hrs
-1.8
-1.4
-1.2
-0.3
+0.0
motility
outer cut, LB soft agar motility assay
-1.2
-0.5
-0.6
-0.3
+0.1
carbon source
L-Citrulline
-0.8
-0.7
-0.3
+0.0
-0.1
stress
nitrate 200 mM
-0.8
-0.6
+0.0
-0.4
-0.0
stress
Lomefloxacin 0.001 mM
-0.7
-0.6
-0.5
+0.1
-0.2
carbon source
L-Ornithine
-0.9
-0.1
-0.6
-0.1
-0.1
carbon source
L-Ornithine
-0.9
-0.3
-0.5
-0.1
+0.0
carbon source
L-Citrulline
-0.1
-0.9
-1.0
+0.3
-0.0
survival
4C survival; 360 hrs
-0.8
-0.5
-0.2
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.6
-0.5
-0.2
-0.2
+0.1
stress
Tetracycline 0.0016 mg/ml
-0.7
-0.4
-0.4
-0.2
+0.2
motility
outer cut, LB soft agar motility assay
-0.6
-0.2
-0.1
-0.4
-0.1
nitrogen source
L-Tryptophan (N)
-0.7
-0.3
-0.2
-0.0
-0.1
carbon source
L-Citrulline
-0.3
-0.6
-0.5
-0.0
+0.0
stress
perchlorate 75 mM
-0.5
-0.3
-0.1
-0.4
-0.0
carbon source
L-Ornithine
-0.5
-0.2
-0.2
-0.2
+0.0
carbon source
D-Glucose
+0.0
-0.6
-0.4
-0.2
+0.1
carbon source
L-Citrulline
-0.2
-0.8
-0.3
+0.2
+0.2
carbon source
propionate (C)
-0.4
-0.6
-0.3
+0.2
+0.1
carbon source
L-Isoleucine (C)
-0.6
-0.2
+0.1
-0.3
+0.0
stress
syringaldehyde 5 mM
-0.4
+0.2
-0.1
-0.6
+0.1
carbon source
L-Ornithine
-0.2
-0.4
-0.6
+0.1
+0.1
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.3
-0.2
+0.0
-0.9
-0.0
stress
Benzalkonium Chloride 0.012 mg/ml
+0.4
-0.2
-0.2
-0.7
-0.1
pH
Minimal media pH9
-0.1
-0.6
+0.2
-0.2
+0.1
stress
Paraquat dichloride 0.032 mg/mL
+0.1
+0.2
+0.1
-1.0
+0.2
stress
Cisplatin 0.006 mg/ml
+0.6
-0.6
+0.1
-0.5
-0.0
stress
acetate 68 mM
+0.4
-0.4
-0.3
-0.1
-0.0
stress
Sisomicin 0.008 mg/ml
-0.2
+0.3
+0.2
-0.6
-0.1
stress
Nickel (II) chloride 0.625 mM
+0.2
+0.7
+0.2
+0.0
-0.0
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