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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_24025 and AO353_24030 overlap by 7 nucleotides
AO353_24030 and AO353_24035 are separated by 50 nucleotides
AO353_24035 and AO353_24040 overlap by 4 nucleotides
AO353_24040 and AO353_24045 overlap by 4 nucleotides
AO353_24025: AO353_24025 - ABC transporter ATP-binding protein, at 5,283,272 to 5,285,062
_24025
AO353_24030: AO353_24030 - ABC transporter ATP-binding protein, at 5,285,056 to 5,286,825
_24030
AO353_24035: AO353_24035 - iron ABC transporter permease, at 5,286,876 to 5,287,766
_24035
AO353_24040: AO353_24040 - iron ABC transporter permease, at 5,287,763 to 5,288,713
_24040
AO353_24045: AO353_24045 - iron ABC transporter ATP-binding protein, at 5,288,710 to 5,289,492
_24045
Group
Condition
AO353
_24025
AO353
_24030
AO353
_24035
AO353
_24040
AO353
_24045
survival
4C survival; 672 hrs
-1.7
-1.8
-1.8
-2.4
-1.8
carbon source
L-Ornithine
-0.6
-0.4
-1.1
-0.6
-0.9
carbon source
L-Ornithine
-0.8
-0.3
-0.8
+0.1
-0.9
carbon source
L-Citrulline
-0.7
-0.7
-0.4
-0.6
-0.3
motility
outer cut, LB soft agar motility assay
-0.2
-0.0
-0.6
-0.5
-1.2
carbon source
L-Citrulline
-0.3
-0.7
-0.6
-0.7
-0.1
survival
4C survival; 360 hrs
-0.5
-0.4
-0.4
-0.4
-0.8
carbon source
L-Citrulline
-0.6
-0.1
-0.9
-0.5
-0.2
stress
nitrate 200 mM
-0.3
-0.4
-0.3
-0.6
-0.8
carbon source
L-Citrulline
-0.3
-0.0
-0.6
-0.5
-0.8
motility
outer cut, LB soft agar motility assay
-0.0
-0.3
-0.5
-0.7
-0.6
carbon source
D-Glucose
-0.5
-0.5
-0.5
-0.1
-0.5
nitrogen source
Adenosine (N)
-0.1
-0.3
-0.3
-0.5
-0.7
carbon source
D-Glucose
-0.5
-0.7
-0.4
-0.2
+0.0
survival
4C survival; 192 hrs
-0.3
-0.5
-0.5
-0.1
-0.4
nitrogen source
Parabanic Acid (N)
-0.3
-0.1
-0.2
-0.2
-0.8
carbon source
L-Ornithine
-0.4
-0.2
-0.6
-0.2
-0.2
nitrogen source
Adenine (N)
-0.2
-0.1
-0.0
-0.5
-0.6
nitrogen source
L-Tryptophan (N)
+0.1
-0.2
-0.4
-0.3
-0.7
nitrogen source
Uridine (N)
-0.2
-0.2
-0.1
-0.4
-0.6
carbon source
L-Ornithine
-0.1
-0.0
-0.8
-0.1
-0.5
carbon source
propionate (C)
-0.3
-0.5
-0.1
-0.2
-0.4
carbon source
L-Phenylalanine (C)
+0.1
+0.3
-0.0
-0.6
-0.7
stress
Cisplatin 0.006 mg/ml
+0.1
+0.4
-0.3
-0.3
-0.7
carbon source
L-Isoleucine (C)
+0.2
-0.1
-0.3
+0.2
-0.6
stress
Tetracycline 0.0008 mg/ml
+0.4
+0.3
-0.1
-0.1
-0.4
stress
Cisplatin 0.006 mg/ml
-0.7
+0.0
-0.2
+0.4
+0.6
stress
Tetracycline 0.0016 mg/ml
+0.9
+0.4
-0.0
-0.2
-0.7
stress
Doxycycline hyclate 0.0006 mg/ml
+0.6
+0.5
+0.1
-0.2
-0.1
stress
Lomefloxacin 0.001 mM
+1.8
+0.7
-0.3
-0.3
-0.7
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AO353_24030
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AO353_24035
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AO353_24045
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