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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_23905 and AO353_23910 are separated by 2 nucleotides
AO353_23910 and AO353_23915 are separated by 179 nucleotides
AO353_23915 and AO353_23920 are separated by 0 nucleotides
AO353_23920 and AO353_23925 overlap by 11 nucleotides
AO353_23905: AO353_23905 - GntR family transcriptional regulator, at 5,245,604 to 5,246,482
_23905
AO353_23910: AO353_23910 - response regulator, at 5,246,485 to 5,246,847
_23910
AO353_23915: AO353_23915 - chemotaxis protein CheY, at 5,247,027 to 5,250,494
_23915
AO353_23920: AO353_23920 - chemotaxis protein CheR, at 5,250,495 to 5,251,316
_23920
AO353_23925: AO353_23925 - histidine kinase, at 5,251,306 to 5,252,520
_23925
Group
Condition
AO353
_23905
AO353
_23910
AO353
_23915
AO353
_23920
AO353
_23925
carbon source
L-Alanine (C)
-0.2
-1.8
+0.2
-0.8
-0.7
carbon source
acetate (C)
-0.7
-0.9
-0.0
-0.4
-0.3
stress
Tetracycline 0.0016 mg/ml
-0.3
-1.1
-0.1
-0.4
-0.5
carbon source
L-Asparagine (C)
-0.6
-1.0
+0.0
-0.5
-0.3
motility
outer cut, LB soft agar motility assay
-1.1
-0.4
+0.1
-0.4
-0.4
stress
Lomefloxacin 0.001 mM
-0.8
-0.9
+0.2
-0.6
+0.1
nitrogen source
L-tyrosine (N)
-0.8
-0.4
+0.2
-0.2
-0.8
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
-1.3
-0.2
-0.3
-0.1
carbon source
Carnitine Hydrochloride (C)
-1.0
+0.3
+0.2
-0.5
-0.2
nitrogen source
Parabanic Acid (N)
-1.7
+0.3
+0.3
-0.1
+0.1
carbon source
L-Phenylalanine (C)
+0.4
-1.0
+0.2
-0.2
-0.5
nitrogen source
Urea (N)
-0.5
+0.4
+0.3
-0.4
-0.7
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.6
+0.5
+0.1
-0.5
-0.5
carbon source
L-Tryptophan (C)
+0.5
-0.4
+0.4
-0.2
-1.2
nitrogen source
Uridine (N)
-0.6
+0.4
+0.2
-0.3
-0.6
stress
Benzalkonium Chloride 0.012 mg/ml
-0.5
+0.7
-0.2
-0.2
-0.6
stress
Thallium(I) acetate 0.016 mg/ml
+0.5
-1.0
-0.1
+0.2
-0.3
stress
Ceftazidime 0.12 mg/ml
-0.5
+0.7
-0.2
-0.2
-0.5
carbon source
L-Proline (C)
-0.7
+0.6
+0.1
-0.2
-0.3
carbon source
L-Isoleucine (C)
-0.5
+0.6
+0.4
-0.1
-0.9
stress
Doxycycline hyclate 0.0002 mg/ml
-1.3
+1.2
+0.1
+0.2
-0.5
carbon source
m-Inositol (C)
-0.5
+0.6
+0.3
-0.2
-0.4
carbon source
acetate (C)
+0.4
-0.5
-0.4
-0.3
+0.6
motility
outer cut, LB soft agar motility assay
-0.6
+0.4
+0.5
-0.4
+0.2
stress
methylglyoxal 0.009 vol%
-0.5
-0.8
+0.1
+0.7
+0.7
stress
methylglyoxal 0.008 vol%
+0.6
-0.9
+0.3
+0.6
+0.2
survival
4C survival; 672 hrs
+0.2
+0.1
-1.3
+0.5
+1.4
stress
perchlorate 75 mM
-0.2
+0.0
+0.2
+1.2
+0.5
stress
nitrate 200 mM
-0.0
-0.4
+0.5
+1.1
+0.9
stress
Fusidic 0.125 mg/ml
+0.2
+0.3
+0.4
+0.6
+0.6
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