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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_23435 and AO353_23440 are separated by 1 nucleotides
AO353_23440 and AO353_23445 are separated by 36 nucleotides
AO353_23445 and AO353_23450 are separated by 114 nucleotides
AO353_23450 and AO353_23455 are separated by 131 nucleotides
AO353_23435: AO353_23435 - twin-arginine translocation pathway signal protein, at 5,132,711 to 5,134,879
_23435
AO353_23440: AO353_23440 - hypothetical protein, at 5,134,881 to 5,135,459
_23440
AO353_23445: AO353_23445 - glyoxalase, at 5,135,496 to 5,135,921
_23445
AO353_23450: AO353_23450 - LysR family transcriptional regulator, at 5,136,036 to 5,136,890
_23450
AO353_23455: AO353_23455 - enoyl-ACP reductase, at 5,137,022 to 5,137,816
_23455
Group
Condition
AO353
_23435
AO353
_23440
AO353
_23445
AO353
_23450
AO353
_23455
motility
outer cut, LB soft agar motility assay
+0.3
-2.8
N.D.
-0.0
+0.3
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.0
-0.5
N.D.
-1.3
+0.0
nitrogen source
L-Glutamic (N)
+0.1
-1.0
N.D.
-0.6
-0.2
stress
methylglyoxal 0.009 vol%
+0.2
+0.2
N.D.
-2.1
+0.0
stress
Lomefloxacin 0.001 mM
-0.1
+0.9
N.D.
-2.2
+0.2
nitrogen source
L-Arginine (N)
+0.2
-0.4
N.D.
-0.9
-0.1
motility
outer cut, LB soft agar motility assay
+0.0
-1.0
N.D.
-0.7
+0.4
stress
Benzalkonium Chloride 0.012 mg/ml
+0.0
+0.3
N.D.
-1.7
+0.2
stress
Cisplatin 0.006 mg/ml
-0.0
+0.5
N.D.
-1.3
-0.2
nitrogen source
L-Threonine (N)
+0.2
-0.9
N.D.
-0.3
+0.1
carbon source
L-Ornithine
+0.4
-0.6
N.D.
+0.1
-0.6
nitrogen source
Glycine (N)
+0.2
-1.0
N.D.
-0.1
+0.2
carbon source
L-Aspartic Acid (C)
-0.0
+0.7
N.D.
-1.1
-0.1
carbon source
L-Citrulline
+0.1
-0.6
N.D.
+0.5
-0.6
stress
Choline chloride 358 mM
+0.1
-1.1
N.D.
+0.7
-0.1
carbon source
D-Glucose
+0.4
-1.1
N.D.
+0.1
+0.2
stress
Rifampicin 0.005 mg/ml
-0.3
+0.7
N.D.
-0.7
+0.1
carbon source
casaminos (C)
+0.1
+0.5
N.D.
-1.1
+0.2
stress
Tetracycline 0.0016 mg/ml
+0.1
+0.8
N.D.
-1.3
+0.1
stress
Sisomicin 0.008 mg/ml
-0.0
+0.4
N.D.
-1.0
+0.5
stress
Vancomycin 1 mg/ml
+0.2
-0.6
N.D.
+0.6
-0.2
stress
Cobalt chloride 0.16 mM
+0.2
-0.5
N.D.
+0.6
-0.2
carbon source
L-Isoleucine (C)
-0.1
+0.4
N.D.
-0.5
+0.5
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.1
-0.8
N.D.
+0.8
+0.0
carbon source
D-Serine (C)
+0.2
+0.6
N.D.
-0.7
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
+0.1
N.D.
+0.5
+0.9
carbon source
Ethanol (C)
-0.1
+0.7
N.D.
+0.5
+0.3
stress
Cobalt chloride 0.32 mM
-0.1
+0.5
N.D.
+0.7
+0.3
carbon source
L-Citrulline
+0.3
+0.3
N.D.
+0.9
+0.2
carbon source
L-Ornithine
+0.2
+0.9
N.D.
+0.6
+0.0
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