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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_23180 and AO353_23185 are separated by 39 nucleotides
AO353_23185 and AO353_23190 are separated by 350 nucleotides
AO353_23190 and AO353_23195 are separated by 138 nucleotides
AO353_23195 and AO353_23200 are separated by 25 nucleotides
AO353_23180: AO353_23180 - nitrate ABC transporter substrate-binding protein, at 5,085,258 to 5,086,259
_23180
AO353_23185: AO353_23185 - ABC transporter ATP-binding protein, at 5,086,299 to 5,087,135
_23185
AO353_23190: AO353_23190 - LacI family transcriptional regulator, at 5,087,486 to 5,088,544
_23190
AO353_23195: AO353_23195 - AP endonuclease, at 5,088,683 to 5,089,606
_23195
AO353_23200: AO353_23200 - oxidoreductase, at 5,089,632 to 5,090,801
_23200
Group
Condition
AO353
_23180
AO353
_23185
AO353
_23190
AO353
_23195
AO353
_23200
stress
Cisplatin 0.006 mg/ml
+0.3
N.D.
-0.7
-0.3
-0.7
carbon source
L-Alanine (C)
-0.1
N.D.
-0.2
-0.5
-0.1
pH
Minimal media pH9
-0.3
N.D.
-0.3
-0.4
+0.1
carbon source
D-Glucose
-0.8
N.D.
+0.1
+0.4
-0.5
denitrifying
Nitrate reduction, replicate B
-0.7
N.D.
+0.0
+0.2
-0.1
carbon source
D-Trehalose (C)
-0.1
N.D.
+0.1
-0.3
-0.3
stress
methylglyoxal 0.008 vol%
-0.3
N.D.
-0.3
-0.2
+0.2
nitrogen source
Parabanic Acid (N)
-0.6
N.D.
+0.2
+0.0
-0.1
carbon source
L-Citrulline
-0.4
N.D.
+0.2
-0.4
+0.1
lb
LB
+0.1
N.D.
-0.4
+0.3
-0.2
carbon source
L-Ornithine
-0.3
N.D.
+0.1
+0.3
-0.3
stress
Cisplatin 0.006 mg/ml
+0.5
N.D.
-0.8
-0.2
+0.4
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.4
N.D.
-0.1
+0.2
+0.2
stress
Benzalkonium Chloride 0.012 mg/ml
-0.4
N.D.
+0.3
+0.1
-0.1
carbon source
L-Ornithine
-0.4
N.D.
+0.4
+0.3
-0.3
motility
outer cut, LB soft agar motility assay
-0.8
N.D.
+0.1
+0.3
+0.5
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
N.D.
-0.4
+0.1
-0.0
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.4
N.D.
+0.2
-0.0
+0.3
stress
copper (II) chloride 2.5 mM
+0.3
N.D.
+0.2
-0.5
+0.0
stress
Fusidic 0.125 mg/ml
+0.4
N.D.
+0.2
-0.5
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.7
N.D.
-0.4
-0.2
+0.1
carbon source
propionate (C)
+0.7
N.D.
-0.1
-0.1
-0.1
stress
Choline Lysine 12 mM
-0.2
N.D.
+0.2
+0.3
+0.3
survival
4C survival; 672 hrs
-0.1
N.D.
+0.4
+0.3
+0.0
stress
Furfuryl Alcohol 0.25 vol%
+0.2
N.D.
+0.2
+0.4
-0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.0
N.D.
+0.4
-0.3
+0.5
motility
outer cut, LB soft agar motility assay
+0.1
N.D.
+0.0
+0.9
-0.4
stress
Sisomicin 0.008 mg/ml
+0.3
N.D.
-0.0
+0.6
-0.1
carbon source
propionate (C)
+0.6
N.D.
+0.2
+0.2
+0.0
carbon source
L-Ornithine
+0.3
N.D.
+0.2
+0.5
-0.1
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