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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_23155 and AO353_23160 overlap by 10 nucleotides
AO353_23160 and AO353_23165 are separated by 4 nucleotides
AO353_23165 and AO353_23170 are separated by 13 nucleotides
AO353_23170 and AO353_23175 overlap by 1 nucleotides
AO353_23155: AO353_23155 - IclR family transcriptional regulator, at 5,081,390 to 5,082,232
_23155
AO353_23160: AO353_23160 - hydrolase, at 5,082,223 to 5,083,107
_23160
AO353_23165: AO353_23165 - cupin, at 5,083,112 to 5,083,675
_23165
AO353_23170: AO353_23170 - short-chain dehydrogenase, at 5,083,689 to 5,084,453
_23170
AO353_23175: AO353_23175 - ABC transporter permease, at 5,084,453 to 5,085,229
_23175
Group
Condition
AO353
_23155
AO353
_23160
AO353
_23165
AO353
_23170
AO353
_23175
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
-0.3
-0.6
-1.1
-0.1
motility
outer cut, LB soft agar motility assay
-0.6
-0.3
-0.8
-0.6
-0.0
stress
acetate 34 mM
-0.2
-0.5
-1.3
-0.2
-0.2
carbon source
L-Tryptophan (C)
+0.8
-0.3
-2.0
-0.6
-0.1
pH
Minimal media pH9
-0.2
-0.5
-1.2
-0.5
+0.2
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.3
-0.6
-0.8
-0.4
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-1.8
+1.0
-1.1
+0.6
-0.6
stress
Fusidic 0.125 mg/ml
-0.8
-0.6
-0.8
+0.1
+0.2
stress
Sisomicin 0.008 mg/ml
-1.2
-1.0
+0.4
-0.4
+0.2
carbon source
L-Valine (C)
-0.0
+0.3
-1.9
+0.1
-0.3
pH
Minimal media pH6
-1.2
-0.4
+0.3
-0.4
+0.1
denitrifying
Nitrate reduction, replicate B
-1.6
-0.5
-0.2
+0.6
+0.2
carbon source
L-Aspartic Acid (C)
-0.5
-0.6
-0.2
+0.4
-0.4
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
+0.5
-0.7
-0.4
-0.1
stress
Cisplatin 0.006 mg/ml
+0.3
+0.4
-0.8
-1.0
+0.4
pH
Minimal media pH9
-0.3
-0.5
+0.9
+0.4
-0.8
lb
LB
+0.6
+0.3
-0.7
-0.7
+0.4
carbon source
L-Ornithine
-1.3
+0.3
+0.0
+0.3
+0.6
stress
Thallium(I) acetate 0.016 mg/ml
+0.2
+0.4
-0.9
-0.2
+0.6
stress
Thallium(I) acetate 0.016 mg/ml
+0.8
+0.5
-0.8
-0.3
+0.2
carbon source
L-Isoleucine (C)
-0.9
-0.1
+1.0
+0.1
+0.4
stress
Cisplatin 0.006 mg/ml
+0.9
+0.3
-0.8
-0.1
+0.4
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
-1.1
+1.5
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.2
+0.3
+1.6
-0.8
+0.2
carbon source
propionate (C)
-0.2
+0.9
+0.3
+0.5
+0.5
carbon source
Uridine (C)
+0.4
+0.3
+0.8
+0.3
+0.4
carbon source
propionate (C)
+0.2
+0.7
+0.7
+0.2
+0.5
carbon source
acetate (C)
+0.4
+0.4
+0.8
+0.7
+0.3
carbon source
acetate (C)
-0.4
+0.5
+1.3
+0.4
+0.7
carbon source
Cytidine (C)
+0.3
+0.7
+0.9
+0.2
+0.6
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