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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_23110 and AO353_23115 are separated by 389 nucleotides
AO353_23115 and AO353_23120 are separated by 29 nucleotides
AO353_23120 and AO353_23125 are separated by 21 nucleotides
AO353_23125 and AO353_23130 are separated by 16 nucleotides
AO353_23110: AO353_23110 - hypothetical protein, at 5,071,725 to 5,072,954
_23110
AO353_23115: AO353_23115 - ferredoxin, at 5,073,344 to 5,074,303
_23115
AO353_23120: AO353_23120 - 3-phenylpropionate dioxygenase, at 5,074,333 to 5,075,367
_23120
AO353_23125: AO353_23125 - hypothetical protein, at 5,075,389 to 5,075,616
_23125
AO353_23130: AO353_23130 - glyoxalase, at 5,075,633 to 5,076,598
_23130
Group
Condition
AO353
_23110
AO353
_23115
AO353
_23120
AO353
_23125
AO353
_23130
stress
Cisplatin 0.006 mg/ml
-0.5
-0.2
+0.1
-0.6
+0.1
carbon source
D-Alanine (C)
-0.6
-0.4
-0.6
+0.2
+0.3
carbon source
D-Glucose
+0.4
+0.1
-0.3
-0.9
-0.3
carbon source
Tween 20 (C)
+0.2
+0.0
-0.4
-0.3
-0.3
motility
outer cut, LB soft agar motility assay
-0.4
-0.2
-0.5
+0.1
+0.2
stress
Cisplatin 0.006 mg/ml
-0.2
+0.1
-0.3
-0.5
+0.1
stress
sodium fluoride 6.25 mM
-0.1
-0.0
-0.3
-0.5
+0.3
stress
Furfuryl Alcohol 0.0625 vol%
-0.3
-0.0
-0.3
+0.4
-0.3
carbon source
Ethanol (C)
-0.2
+0.2
-0.6
-0.1
+0.1
carbon source
L-Citrulline
-0.2
-0.1
+0.0
-0.7
+0.5
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
-0.2
-0.4
+0.8
-0.2
carbon source
L-Ornithine
+0.3
+0.4
-0.5
-0.1
-0.4
carbon source
acetate (C)
-0.2
-0.0
-0.5
+0.7
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.3
-0.3
-0.1
+0.4
+0.1
lb
LB
-0.3
-0.3
+0.0
+0.6
-0.1
pH
Minimal media pH9
+0.1
-0.3
-0.3
+0.4
+0.1
stress
A22 0.01 mg/ml
+0.1
-0.1
+0.1
+0.3
-0.4
carbon source
Uridine (C)
+0.0
-0.2
-0.6
+0.2
+0.5
carbon source
casaminos (C)
-0.0
-0.1
-0.3
+0.3
+0.3
carbon source
L-Isoleucine (C)
+0.1
-0.3
+0.4
-0.3
+0.3
stress
Benzalkonium Chloride 0.012 mg/ml
-0.0
+0.1
+0.6
-0.2
-0.2
carbon source
L-Ornithine
-0.1
+0.1
-0.5
+0.9
-0.2
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.3
-0.2
+0.0
+0.2
+0.6
carbon source
L-Ornithine
+0.1
-0.1
-0.3
+0.4
+0.3
stress
Gentamicin 0.006 mg/ml
-0.1
-0.2
-0.1
+0.4
+0.5
carbon source
D-Glucose
-0.0
+0.2
-0.0
+0.7
-0.3
stress
nitrite 10 mM
+0.3
+0.3
+0.4
-0.1
-0.3
nitrogen source
Parabanic Acid (N)
-0.2
-0.0
+0.0
+0.5
+0.6
stress
acetate 68 mM
-0.1
-0.1
+0.5
+0.6
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.2
+0.3
-0.2
+0.7
+0.6
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AO353_23120
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