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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_22945 and AO353_22950 are separated by 84 nucleotides
AO353_22950 and AO353_22955 are separated by 227 nucleotides
AO353_22955 and AO353_22960 are separated by 155 nucleotides
AO353_22960 and AO353_22965 are separated by 0 nucleotides
AO353_22945: AO353_22945 - glycogen branching protein, at 5,038,953 to 5,041,187
_22945
AO353_22950: AO353_22950 - universal stress protein UspA, at 5,041,272 to 5,042,138
_22950
AO353_22955: AO353_22955 - tRNA hydroxylase, at 5,042,366 to 5,042,977
_22955
AO353_22960: AO353_22960 - transcriptional regulator, at 5,043,133 to 5,043,840
_22960
AO353_22965: AO353_22965 - ATPase, at 5,043,841 to 5,045,118
_22965
Group
Condition
AO353
_22945
AO353
_22950
AO353
_22955
AO353
_22960
AO353
_22965
nitrogen source
Gly-Glu (N)
-4.1
+0.1
+0.0
-0.1
-0.4
nitrogen source
Gly-DL-Asp (N)
-3.3
-0.5
-0.3
-0.1
+0.1
nitrogen source
Urea (N)
-3.6
-0.7
+0.5
-0.1
-0.0
nitrogen source
NAG (N)
-4.4
+0.1
+0.2
+0.4
-0.2
nitrogen source
Thymine (N)
-4.1
-0.1
+0.3
+0.1
-0.2
nitrogen source
Inosine (N)
-2.9
-0.2
-0.4
-0.3
+0.0
nitrogen source
L-Lysine (N)
-3.6
+0.0
+0.2
-0.2
-0.1
nitrogen source
Uridine (N)
-4.0
+0.3
-0.0
-0.0
+0.1
nitrogen source
L-tyrosine (N)
-3.7
-0.3
+0.5
-0.0
-0.2
nitrogen source
L-Phenylalanine (N)
-3.6
-0.2
+0.3
+0.2
-0.2
nitrogen source
L-Lysine (N)
-3.2
+0.0
-0.3
-0.1
+0.1
nitrogen source
Carnitine Hydrochloride (N)
-3.0
-0.2
+0.0
-0.1
-0.1
nitrogen source
D-Glucosamine Hydrochloride (N)
-4.0
+0.1
+0.5
+0.1
-0.0
nitrogen source
L-Tryptophan (N)
-3.0
-0.2
+0.3
-0.2
-0.1
nitrogen source
L-Threonine (N)
-3.5
+0.2
+0.1
+0.1
-0.0
carbon source
L-Phenylalanine (C)
-0.0
-1.1
-1.3
+0.1
-0.3
carbon source
Ethanol (C)
-1.6
+0.1
-0.6
-0.6
+0.0
nitrogen source
L-Threonine (N)
-3.0
+0.1
-0.1
+0.3
+0.2
nitrogen source
Parabanic Acid (N)
-3.1
+0.4
+0.6
-0.6
+0.1
carbon source
D-Ribose (C)
-2.8
+0.6
+0.3
-0.2
-0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.7
+1.2
-4.1
+0.3
+0.1
carbon source
D-Ribose (C)
-2.5
+0.1
+0.5
+0.2
+0.0
carbon source
L-Ornithine
-0.2
-1.4
+0.7
-0.0
-0.5
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-1.6
-0.1
+0.5
-0.3
+0.1
carbon source
butyrate (C)
-1.6
+0.4
-0.0
+0.2
-0.3
stress
Polymyxin B sulfate 4 mg/ml
-0.2
+0.3
+0.7
-0.4
-1.4
motility
outer cut, LB soft agar motility assay
-0.3
+0.6
-0.5
+0.2
-1.0
carbon source
L-Ornithine
-0.4
+0.5
-0.9
-0.3
+0.2
stress
Cisplatin 0.006 mg/ml
+0.0
-0.8
+1.6
+0.2
-0.3
stress
Sisomicin 0.008 mg/ml
-0.0
+0.1
+1.7
+0.7
-0.5
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