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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_22925 and AO353_22930 are separated by 195 nucleotides
AO353_22930 and AO353_22935 are separated by 207 nucleotides
AO353_22935 and AO353_22940 are separated by 181 nucleotides
AO353_22940 and AO353_22945 overlap by 4 nucleotides
AO353_22925: AO353_22925 - (Fe-S)-binding protein, at 5,031,387 to 5,032,799
_22925
AO353_22930: AO353_22930 - hypothetical protein, at 5,032,995 to 5,033,228
_22930
AO353_22935: AO353_22935 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 5,033,436 to 5,035,433
_22935
AO353_22940: AO353_22940 - alpha-amylase, at 5,035,615 to 5,038,956
_22940
AO353_22945: AO353_22945 - glycogen branching protein, at 5,038,953 to 5,041,187
_22945
Group
Condition
AO353
_22925
AO353
_22930
AO353
_22935
AO353
_22940
AO353
_22945
nitrogen source
Gly-Glu (N)
-0.1
-1.0
-1.5
-0.2
-4.1
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.0
-0.0
-0.9
-0.8
-4.0
nitrogen source
Thymine (N)
+0.1
-0.6
-0.5
-0.6
-4.1
nitrogen source
Gly-DL-Asp (N)
+0.1
+0.4
-2.1
-0.5
-3.3
nitrogen source
NAG (N)
-0.1
-0.2
-0.4
+0.1
-4.4
nitrogen source
Uridine (N)
-0.3
+0.2
-0.4
-0.1
-4.0
nitrogen source
Parabanic Acid (N)
-0.2
-0.6
-0.2
-0.1
-3.1
nitrogen source
L-tyrosine (N)
-0.1
-0.6
+0.0
+0.0
-3.7
nitrogen source
L-Threonine (N)
+0.0
-0.8
-0.2
-0.1
-3.0
nitrogen source
Urea (N)
-0.0
+0.0
-0.3
-0.1
-3.6
nitrogen source
L-Phenylalanine (N)
+0.1
-0.5
-0.4
+0.5
-3.6
nitrogen source
L-Lysine (N)
-0.0
+0.3
-0.3
-0.3
-3.6
nitrogen source
L-Lysine (N)
-0.0
-0.2
-0.3
-0.1
-3.2
nitrogen source
L-Threonine (N)
-0.2
+0.2
-0.1
-0.1
-3.5
nitrogen source
L-Tryptophan (N)
+0.0
-0.3
-0.2
-0.0
-3.0
carbon source
D-Ribose (C)
-0.1
-0.2
-0.2
-0.0
-2.8
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.2
-0.5
-1.6
+0.2
-1.6
nitrogen source
Carnitine Hydrochloride (N)
-0.1
-0.1
-0.1
+0.0
-3.0
carbon source
D-Ribose (C)
+0.0
-0.3
-0.2
-0.1
-2.5
carbon source
butyrate (C)
-0.2
-0.5
-0.5
-0.2
-1.6
carbon source
Ethanol (C)
-0.1
-0.1
-0.9
-0.2
-1.4
nitrogen source
Inosine (N)
+0.1
+0.5
-0.0
-0.0
-2.9
carbon source
Uridine (C)
-0.2
-0.5
-0.4
-0.0
-1.2
motility
outer cut, LB soft agar motility assay
-0.6
-0.9
-0.6
+0.0
-0.3
carbon source
L-Citrulline
+0.1
-2.4
+0.3
-0.0
-0.3
nitrogen source
Adenine (N)
-0.1
-0.8
-0.1
+0.0
-1.2
carbon source
L-Citrulline
+0.2
-1.4
-0.1
-0.3
-0.5
carbon source
Ethanol (C)
+0.3
+0.3
-0.6
-0.1
-1.6
carbon source
L-Ornithine
+0.6
-1.4
-0.2
-0.0
-0.3
denitrifying
Nitrate reduction, replicate C
+0.6
+1.0
+0.2
-0.0
-0.5
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