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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_22430 and AO353_22435 are separated by 38 nucleotides
AO353_22435 and AO353_22440 are separated by 500 nucleotides
AO353_22440 and AO353_22445 are separated by 114 nucleotides
AO353_22445 and AO353_22450 are separated by 814 nucleotides
AO353_22430: AO353_22430 - hemolysin secretion protein D, at 4,915,367 to 4,916,680
_22430
AO353_22435: AO353_22435 - channel protein TolC, at 4,916,719 to 4,918,068
_22435
AO353_22440: AO353_22440 - LuxR family transcriptional regulator, at 4,918,569 to 4,919,285
_22440
AO353_22445: AO353_22445 - hypothetical protein, at 4,919,400 to 4,923,551
_22445
AO353_22450: AO353_22450 - dipeptidase, at 4,924,366 to 4,926,105
_22450
Group
Condition
AO353
_22430
AO353
_22435
AO353
_22440
AO353
_22445
AO353
_22450
carbon source
D-Glucose
-0.6
-0.1
+0.1
+0.0
-0.3
carbon source
L-Alanine (C)
-0.4
-0.3
+0.2
-0.3
+0.2
stress
Nickel (II) chloride 0.625 mM
-0.3
-0.1
-0.3
+0.1
-0.1
carbon source
D-Glucose
+0.1
-0.2
-0.2
-0.2
-0.2
nitrogen source
L-Glutamine (N)
-0.1
-0.3
+0.1
+0.0
-0.2
carbon source
L-Glutamine (C)
-0.2
-0.3
-0.1
-0.1
+0.1
nitrogen source
Gly-Glu (N)
-0.2
-0.2
+0.3
-0.0
-0.3
stress
Cisplatin 0.006 mg/ml
-0.3
-0.3
+0.0
-0.1
+0.2
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.0
-0.2
-0.2
+0.2
-0.2
stress
methylglyoxal 0.008 vol%
+0.1
-0.3
+0.1
+0.0
-0.3
motility
outer cut, LB soft agar motility assay
-0.1
-0.1
+0.2
+0.0
-0.3
carbon source
acetate (C)
-0.2
+0.1
+0.5
-0.1
-0.4
survival
4C survival; 360 hrs
-0.4
+0.1
+0.2
+0.1
-0.0
stress
Cisplatin 0.006 mg/ml
+0.3
+0.2
-0.1
-0.1
-0.3
carbon source
acetate (C)
-0.1
-0.1
+0.3
+0.2
-0.2
pH
Minimal media pH9
-0.0
-0.2
+0.1
+0.4
-0.0
stress
Lomefloxacin 0.001 mM
-0.4
+0.3
+0.2
+0.3
-0.1
carbon source
L-Phenylalanine (C)
-0.3
+0.0
+0.3
+0.0
+0.2
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.2
+0.2
+0.2
-0.0
+0.1
carbon source
L-Isoleucine (C)
-0.2
-0.0
+0.3
+0.2
+0.0
carbon source
Fumarate (C)
+0.0
+0.1
+0.3
+0.2
-0.2
carbon source
L-Citrulline
-0.3
+0.2
+0.3
-0.1
+0.3
carbon source
L-Citrulline
+0.1
-0.3
+0.5
-0.1
+0.3
stress
Sisomicin 0.008 mg/ml
-0.2
+0.2
+0.4
+0.1
+0.0
survival
4C survival; 672 hrs
-0.1
-0.1
+0.6
+0.0
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
+0.3
+0.2
+0.2
-0.3
denitrifying
Nitrate reduction, replicate B
-0.0
+0.2
+0.3
+0.1
-0.0
stress
Rifampicin 0.005 mg/ml
+0.1
+0.0
+0.5
+0.1
-0.1
denitrifying
Nitrate reduction, replicate C
+0.3
+0.1
+0.2
+0.3
-0.1
carbon source
L-Valine (C)
+0.0
+0.4
+0.3
+0.1
+0.1
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