Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_22430 and AO353_22435 are separated by 38 nucleotidesAO353_22435 and AO353_22440 are separated by 500 nucleotidesAO353_22440 and AO353_22445 are separated by 114 nucleotidesAO353_22445 and AO353_22450 are separated by 814 nucleotides AO353_22430: AO353_22430 - hemolysin secretion protein D, at 4,915,367 to 4,916,680 _22430 AO353_22435: AO353_22435 - channel protein TolC, at 4,916,719 to 4,918,068 _22435 AO353_22440: AO353_22440 - LuxR family transcriptional regulator, at 4,918,569 to 4,919,285 _22440 AO353_22445: AO353_22445 - hypothetical protein, at 4,919,400 to 4,923,551 _22445 AO353_22450: AO353_22450 - dipeptidase, at 4,924,366 to 4,926,105 _22450
Group Condition AO353_22430 AO353_22435 AO353_22440 AO353_22445 AO353_22450
carbon source D-Glucose -0.6 -0.1 +0.1 +0.0 -0.3
carbon source L-Alanine (C) -0.4 -0.3 +0.2 -0.3 +0.2
stress Nickel (II) chloride 0.625 mM -0.3 -0.1 -0.3 +0.1 -0.1
carbon source D-Glucose +0.1 -0.2 -0.2 -0.2 -0.2
nitrogen source L-Glutamine (N) -0.1 -0.3 +0.1 +0.0 -0.2
carbon source L-Glutamine (C) -0.2 -0.3 -0.1 -0.1 +0.1
nitrogen source Gly-Glu (N) -0.2 -0.2 +0.3 -0.0 -0.3
stress Cisplatin 0.006 mg/ml -0.3 -0.3 +0.0 -0.1 +0.2
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.0 -0.2 -0.2 +0.2 -0.2
stress methylglyoxal 0.008 vol% +0.1 -0.3 +0.1 +0.0 -0.3
motility outer cut, LB soft agar motility assay -0.1 -0.1 +0.2 +0.0 -0.3
carbon source acetate (C) -0.2 +0.1 +0.5 -0.1 -0.4
survival 4C survival; 360 hrs -0.4 +0.1 +0.2 +0.1 -0.0
stress Cisplatin 0.006 mg/ml +0.3 +0.2 -0.1 -0.1 -0.3
carbon source acetate (C) -0.1 -0.1 +0.3 +0.2 -0.2
pH Minimal media pH9 -0.0 -0.2 +0.1 +0.4 -0.0
stress Lomefloxacin 0.001 mM -0.4 +0.3 +0.2 +0.3 -0.1
carbon source L-Phenylalanine (C) -0.3 +0.0 +0.3 +0.0 +0.2
stress 1-ethyl-3-methylimidazolium acetate 15 mM -0.2 +0.2 +0.2 -0.0 +0.1
carbon source L-Isoleucine (C) -0.2 -0.0 +0.3 +0.2 +0.0
carbon source Fumarate (C) +0.0 +0.1 +0.3 +0.2 -0.2
carbon source L-Citrulline -0.3 +0.2 +0.3 -0.1 +0.3
carbon source L-Citrulline +0.1 -0.3 +0.5 -0.1 +0.3
stress Sisomicin 0.008 mg/ml -0.2 +0.2 +0.4 +0.1 +0.0
survival 4C survival; 672 hrs -0.1 -0.1 +0.6 +0.0 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron +0.3 +0.3 +0.2 +0.2 -0.3
denitrifying Nitrate reduction, replicate B -0.0 +0.2 +0.3 +0.1 -0.0
stress Rifampicin 0.005 mg/ml +0.1 +0.0 +0.5 +0.1 -0.1
denitrifying Nitrate reduction, replicate C +0.3 +0.1 +0.2 +0.3 -0.1
carbon source L-Valine (C) +0.0 +0.4 +0.3 +0.1 +0.1
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