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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_22370 and AO353_22375 are separated by 437 nucleotides
AO353_22375 and AO353_22380 are separated by 3 nucleotides
AO353_22380 and AO353_22385 are separated by 203 nucleotides
AO353_22385 and AO353_22390 are separated by 155 nucleotides
AO353_22370: AO353_22370 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,899,919 to 4,901,103
_22370
AO353_22375: AO353_22375 - cytochrome c-550 PedF, at 4,901,541 to 4,902,002
_22375
AO353_22380: AO353_22380 - amino acid ABC transporter substrate-binding protein, at 4,902,006 to 4,902,881
_22380
AO353_22385: AO353_22385 - dehydrogenase, at 4,903,085 to 4,904,860
_22385
AO353_22390: AO353_22390 - aldehyde dehydrogenase, at 4,905,016 to 4,906,536
_22390
Group
Condition
AO353
_22370
AO353
_22375
AO353
_22380
AO353
_22385
AO353
_22390
carbon source
Ethanol (C)
-1.9
-3.6
-1.9
-2.1
-1.3
carbon source
Ethanol (C)
-2.2
-2.8
-1.9
-2.6
-0.9
carbon source
Cytidine (C)
-2.6
-2.3
-1.5
-1.3
-0.5
carbon source
Uridine (C)
-1.1
-3.4
-0.9
-0.9
-0.4
carbon source
L-Citrulline (C)
-0.9
-2.3
-1.1
-1.3
-0.6
carbon source
L-Citrulline
-1.4
-2.1
-0.4
-0.8
-0.8
carbon source
L-Tryptophan (C)
-1.4
-1.1
-1.6
-1.6
+0.3
carbon source
L-Citrulline
-0.5
-1.7
-0.8
-0.6
-1.5
carbon source
Putrescine (C)
-1.0
-1.1
-1.2
-1.0
-0.3
carbon source
L-Citrulline
+0.2
-2.8
-0.1
-0.7
-1.2
carbon source
L-Citrulline
-0.8
-1.1
-0.8
-1.0
-0.6
carbon source
Carnitine Hydrochloride (C)
-0.4
-1.4
-0.8
-0.7
-0.2
nitrogen source
L-Phenylalanine (N)
-2.1
-1.0
-0.2
-0.1
+0.1
carbon source
L-Leucine (C)
-0.8
-0.9
-0.6
-0.5
-0.0
motility
outer cut, LB soft agar motility assay
-1.8
-0.5
+0.0
-0.1
-0.3
carbon source
L-Phenylalanine (C)
-1.9
-0.0
-0.7
-0.4
+0.3
carbon source
D-Alanine (C)
-0.3
-1.2
-0.5
-0.3
-0.3
carbon source
D-Trehalose (C)
-0.0
-1.2
-0.6
-0.6
-0.0
carbon source
L-Arginine (C)
-0.6
-1.1
-0.4
-0.6
+0.2
carbon source
L-Valine (C)
-0.4
-0.9
-0.3
-0.6
-0.1
carbon source
L-Arginine (C)
-0.2
-1.1
-0.4
-0.5
-0.0
carbon source
D-Serine (C)
-0.6
-0.8
-0.4
+0.0
-0.2
carbon source
L-Ornithine
+0.0
-2.3
-0.1
+0.0
+0.5
carbon source
D-Trehalose (C)
-0.2
-0.6
-0.3
-0.6
+0.1
motility
outer cut, LB soft agar motility assay
+0.1
-0.9
-0.7
+0.1
-0.1
stress
Thallium(I) acetate 0.016 mg/ml
-0.4
-0.4
+0.2
-0.1
-0.7
carbon source
acetate (C)
+0.8
-1.1
-0.1
+0.3
-0.3
stress
acetate 34 mM
-0.8
+0.7
-0.1
+0.1
-0.1
nitrogen source
L-tyrosine (N)
+0.2
+0.4
-0.1
-0.9
+0.4
carbon source
acetate (C)
+1.0
+0.5
+0.2
+0.1
+0.2
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