Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_22355 and AO353_22360 overlap by 4 nucleotidesAO353_22360 and AO353_22365 overlap by 4 nucleotidesAO353_22365 and AO353_22370 are separated by 30 nucleotidesAO353_22370 and AO353_22375 are separated by 437 nucleotides AO353_22355: AO353_22355 - multidrug ABC transporter permease, at 4,897,389 to 4,898,180 _22355 AO353_22360: AO353_22360 - ABC transporter ATP-binding protein, at 4,898,177 to 4,898,932 _22360 AO353_22365: AO353_22365 - hypothetical protein, at 4,898,929 to 4,899,888 _22365 AO353_22370: AO353_22370 - branched-chain amino acid ABC transporter substrate-binding protein, at 4,899,919 to 4,901,103 _22370 AO353_22375: AO353_22375 - cytochrome c-550 PedF, at 4,901,541 to 4,902,002 _22375
Group Condition AO353_22355 AO353_22360 AO353_22365 AO353_22370 AO353_22375
carbon source Ethanol (C) -2.5 -3.6 -2.3 -1.9 -3.6
carbon source Ethanol (C) -2.6 -2.2 -2.2 -2.2 -2.8
carbon source Cytidine (C) -1.4 -1.0 -1.1 -2.6 -2.3
carbon source L-Tryptophan (C) -2.1 -2.2 -1.1 -1.4 -1.1
carbon source Uridine (C) -0.7 -0.8 -1.2 -1.1 -3.4
carbon source L-Citrulline (C) -0.8 -0.8 -1.3 -0.9 -2.3
carbon source Putrescine (C) -1.5 -1.2 -1.2 -1.0 -1.1
carbon source L-Leucine (C) -0.8 -2.4 -0.4 -0.8 -0.9
carbon source Carnitine Hydrochloride (C) -0.8 -1.4 -0.9 -0.4 -1.4
carbon source L-Citrulline -0.5 -1.2 -0.8 -0.5 -1.7
carbon source L-Citrulline -0.4 -0.3 -0.5 -1.4 -2.1
carbon source L-Citrulline -0.3 -0.4 -0.8 +0.2 -2.8
carbon source L-Citrulline -0.6 -0.5 -0.8 -0.8 -1.1
nitrogen source L-Phenylalanine (N) +0.0 -0.1 -0.3 -2.1 -1.0
carbon source L-Arginine (C) -0.5 -0.4 -0.9 -0.2 -1.1
carbon source D-Alanine (C) -0.6 -0.4 -0.6 -0.3 -1.2
carbon source D-Trehalose (C) -0.5 -0.9 -0.5 -0.2 -0.6
carbon source L-Arginine (C) -0.5 +0.0 -0.4 -0.6 -1.1
carbon source L-Phenylalanine (C) -0.3 +0.3 -0.4 -1.9 -0.0
carbon source L-Ornithine +0.2 -0.0 -0.2 +0.0 -2.3
carbon source D-Trehalose (C) -0.8 +0.3 -0.5 -0.0 -1.2
carbon source L-Valine (C) -0.6 +0.4 -0.2 -0.4 -0.9
motility outer cut, LB soft agar motility assay +0.1 -1.4 +0.5 -0.5 -0.3
motility outer cut, LB soft agar motility assay +0.4 +0.3 +0.4 -1.8 -0.5
stress copper (II) chloride 2.5 mM -0.2 +0.6 -0.1 -0.5 -0.8
carbon source acetate (C) +0.2 -0.5 -0.2 +0.8 -1.1
motility outer cut, LB soft agar motility assay -0.4 +0.2 +0.6 +0.1 -0.9
anaerobic Anaerobic, acetate donor; nitrate and iron -0.3 +0.6 -0.9 +0.1 +0.8
stress Benzalkonium Chloride 0.01 mg/ml +0.1 +0.8 -0.3 -0.7 +0.6
pH Minimal media pH9 +0.2 +1.2 +0.0 +0.4 -0.6
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