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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_22330 and AO353_22335 are separated by 91 nucleotides
AO353_22335 and AO353_22340 are separated by 361 nucleotides
AO353_22340 and AO353_22345 overlap by 32 nucleotides
AO353_22345 and AO353_22350 are separated by 60 nucleotides
AO353_22330: AO353_22330 - AraC family transcriptional regulator, at 4,889,895 to 4,890,815
_22330
AO353_22335: AO353_22335 - aldehyde dehydrogenase, at 4,890,907 to 4,892,379
_22335
AO353_22340: AO353_22340 - GfdT protein, at 4,892,741 to 4,893,904
_22340
AO353_22345: AO353_22345 - ATPase, at 4,893,873 to 4,896,467
_22345
AO353_22350: AO353_22350 - LuxR family transcriptional regulator, at 4,896,528 to 4,897,193
_22350
Group
Condition
AO353
_22330
AO353
_22335
AO353
_22340
AO353
_22345
AO353
_22350
carbon source
Ethanol (C)
-0.1
+0.1
-1.0
-0.6
-3.3
carbon source
Ethanol (C)
-0.3
-0.2
-0.5
-0.8
-2.0
carbon source
Trisodium citrate (C)
-0.4
-0.1
-1.3
-1.8
+0.1
carbon source
L-Citrulline (C)
-0.3
-0.2
-0.7
-0.7
-0.9
pH
Minimal media pH9
-0.5
-0.2
-0.7
-0.4
-0.8
nitrogen source
L-tyrosine (N)
+0.1
-0.3
-0.3
-1.1
-0.9
carbon source
Putrescine (C)
+0.2
-0.1
-0.5
-0.8
-1.2
carbon source
L-Histidine (C)
-0.5
-0.1
-0.5
-0.5
-0.6
carbon source
L-Valine (C)
-0.8
+0.1
-0.4
-0.6
-0.4
carbon source
Trisodium citrate (C)
-0.0
+0.1
-1.2
-1.4
+0.4
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-0.1
-1.0
-0.7
-0.0
carbon source
L-Isoleucine (C)
-0.4
+0.0
-0.4
-1.3
+0.3
carbon source
L-Leucine (C)
-0.8
-0.3
+0.3
+0.4
-1.4
carbon source
L-Asparagine (C)
-0.9
+0.1
-0.3
-0.3
-0.4
denitrifying
Nitrate reduction, replicate B
-0.5
-0.1
+0.3
-0.4
-0.9
carbon source
L-Histidine (C)
+0.3
-0.1
-1.0
-0.8
+0.1
motility
outer cut, LB soft agar motility assay
-1.5
+0.1
-0.1
+0.2
-0.2
carbon source
L-Citrulline
-0.0
+0.2
-0.1
-0.1
-1.3
carbon source
D-Glucose
-0.9
-0.2
+0.4
+0.1
-0.7
carbon source
L-Citrulline
+0.5
-0.1
-0.3
-0.5
-0.7
pH
Minimal media pH9
+0.2
-0.4
-0.4
-0.7
+0.2
carbon source
L-Tryptophan (C)
+0.3
+0.2
-0.1
+0.3
-1.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-1.2
-0.2
+0.7
+0.4
-0.3
carbon source
Cytidine (C)
+0.1
+0.1
+0.4
+0.4
-1.1
carbon source
L-Ornithine
-0.3
+0.2
+0.9
+0.7
-1.2
carbon source
L-Ornithine
+0.1
+0.4
+0.7
+1.0
-1.1
carbon source
L-Ornithine
+0.1
+0.2
+0.7
+0.8
-0.7
carbon source
acetate (C)
+0.1
-0.2
+0.5
+1.0
+0.1
carbon source
acetate (C)
+0.5
-0.4
+0.9
+1.1
-0.4
carbon source
L-Ornithine
-0.0
+0.6
+0.9
+1.0
-0.4
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