Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_21555 and AO353_21560 are separated by 226 nucleotidesAO353_21560 and AO353_21565 are separated by 62 nucleotidesAO353_21565 and AO353_21570 are separated by 18 nucleotidesAO353_21570 and AO353_21575 overlap by 4 nucleotides AO353_21555: AO353_21555 - type VI secretion protein, at 4,718,531 to 4,719,103 _21555 AO353_21560: AO353_21560 - type VI secretion protein, at 4,719,330 to 4,719,779 _21560 AO353_21565: AO353_21565 - type VI secretion protein, at 4,719,842 to 4,721,173 _21565 AO353_21570: AO353_21570 - type VI secretion system protein ImpK, at 4,721,192 to 4,721,959 _21570 AO353_21575: AO353_21575 - type VI secretion system protein ImpL, at 4,721,956 to 4,725,774 _21575
Group Condition AO353_21555 AO353_21560 AO353_21565 AO353_21570 AO353_21575
stress Benzalkonium Chloride 0.012 mg/ml +0.2 -1.1 +0.0 -0.4 -0.1
carbon source L-Citrulline -0.2 -0.7 -0.2 -0.1 -0.1
motility outer cut, LB soft agar motility assay +0.0 +0.2 -0.1 -1.2 -0.0
carbon source L-Citrulline -0.2 -0.7 +0.0 +0.2 -0.3
carbon source L-Aspartic Acid (C) -0.6 +0.2 -0.4 +0.0 -0.1
stress Cisplatin 0.006 mg/ml -0.5 -0.1 +0.2 -0.1 -0.3
motility outer cut, LB soft agar motility assay +0.5 -1.0 +0.1 -0.3 -0.2
survival 4C survival; 672 hrs +0.3 -0.8 +0.1 -0.4 +0.1
carbon source acetate (C) +0.1 -0.4 -0.2 -0.6 +0.2
carbon source Ethanol (C) -0.1 +0.3 -0.3 -0.5 -0.1
stress Thallium(I) acetate 0.016 mg/ml -0.5 +0.2 +0.1 -0.3 -0.1
stress 1-ethyl-3-methylimidazolium acetate 20 mM -0.5 -0.4 +0.3 +0.1 -0.1
pH Minimal media pH7 -0.2 -0.9 +0.2 +0.3 +0.1
stress 1-ethyl-3-methylimidazolium acetate 15 mM +0.2 -0.7 +0.2 -0.2 -0.0
carbon source L-Leucine (C) -0.1 -0.7 +0.2 +0.3 +0.1
carbon source acetate (C) +0.5 -0.2 -0.4 +0.1 -0.3
stress Cobalt chloride 0.32 mM +0.1 -0.5 -0.3 +0.5 -0.1
stress Lomefloxacin 0.001 mM -0.3 -0.2 -0.1 +0.7 -0.3
carbon source L-Tryptophan (C) -0.2 +0.3 -0.5 +0.2 -0.2
stress Doxycycline hyclate 0.0002 mg/ml -0.2 -0.6 +0.1 +0.5 +0.0
stress Paraquat dichloride 0.032 mg/mL -0.4 +0.6 +0.0 -0.2 -0.1
nitrogen source Glycine (N) +0.4 -0.4 -0.2 +0.2 -0.0
carbon source L-Valine (C) -0.1 +0.2 -0.2 +0.7 -0.3
lb LB -0.2 +0.4 +0.4 -0.3 +0.1
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.2 +0.3 -0.3 +0.9 +0.1
stress Cisplatin 0.006 mg/ml -0.1 +0.7 +0.3 +0.1 -0.1
carbon source L-Citrulline +0.1 +0.5 +0.2 +0.2 -0.2
denitrifying Nitrate reduction, replicate C +0.3 -0.2 +0.5 +0.5 -0.1
stress Doxycycline hyclate 0.0006 mg/ml +0.7 -0.6 +0.1 +0.6 +0.2
anaerobic Anaerobic, acetate donor; nitrate and iron +0.1 +0.5 -0.5 +0.8 +0.3
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