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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_21380 and AO353_21385 are separated by 70 nucleotides
AO353_21385 and AO353_21390 are separated by 176 nucleotides
AO353_21390 and AO353_21395 are separated by 165 nucleotides
AO353_21395 and AO353_21400 are separated by 325 nucleotides
AO353_21380: AO353_21380 - rhizopine-binding protein, at 4,681,068 to 4,681,994
_21380
AO353_21385: AO353_21385 - m-Inositol ABC transporter, ATPase component (itaA)
(from data)
, at 4,682,065 to 4,683,630
_21385
AO353_21390: AO353_21390 - m-Inositol ABC transporter, permease component (iatP)
(from data)
, at 4,683,807 to 4,684,829
_21390
AO353_21395: AO353_21395 - porin, at 4,684,995 to 4,686,344
_21395
AO353_21400: AO353_21400 - conjugal transfer protein TraR, at 4,686,670 to 4,687,074
_21400
Group
Condition
AO353
_21380
AO353
_21385
AO353
_21390
AO353
_21395
AO353
_21400
carbon source
m-Inositol (C)
-3.4
-3.6
-3.0
-0.0
-0.7
carbon source
m-Inositol (C)
-3.1
-3.6
-2.7
+0.0
+0.3
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
-0.2
+0.3
-2.3
stress
Rifampicin 0.005 mg/ml
-0.6
-0.3
+0.2
+0.1
-1.9
stress
Tetracycline 0.0016 mg/ml
-0.6
-0.2
+0.2
-0.0
-1.7
carbon source
L-Citrulline
+0.1
+0.2
-0.3
-0.1
-2.1
stress
copper (II) chloride 2.5 mM
-0.1
-0.1
+0.0
-0.2
-1.6
motility
outer cut, LB soft agar motility assay
+0.1
-0.3
-0.4
+0.1
-1.3
carbon source
propionate (C)
-0.6
-0.2
+0.3
-0.0
-1.3
stress
Cholin acetate 19 mM
+0.1
-0.2
+0.1
-0.1
-1.5
pH
Minimal media pH9
-0.1
+0.4
-0.4
-0.1
-1.3
carbon source
acetate (C)
-0.4
-0.1
-0.3
+0.5
-1.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
-0.5
-0.7
+0.2
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
-0.4
+0.2
-0.3
-0.1
-0.8
stress
methylglyoxal 0.009 vol%
-0.2
+0.0
+0.2
-0.3
-1.0
motility
outer cut, LB soft agar motility assay
+0.0
-0.5
+0.1
+0.3
-1.1
carbon source
D-Fructose (C)
+0.1
+0.0
+0.1
-0.1
-1.4
carbon source
L-Alanine (C)
+0.4
+0.1
-0.2
+0.2
-1.6
carbon source
propionate (C)
+0.3
-0.1
-0.1
+0.2
-1.1
temperature
LB 20C
-0.0
+0.2
+0.2
+0.0
-1.1
stress
Paraquat dichloride 0.032 mg/mL
-0.4
+0.0
-0.0
-0.2
+1.0
stress
Cisplatin 0.006 mg/ml
-0.3
+0.4
+0.2
-0.0
+1.0
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.0
+0.1
+0.1
-0.3
+1.3
carbon source
L-Isoleucine (C)
+0.5
-0.3
+0.3
+0.1
+0.8
stress
Cobalt chloride 0.32 mM
+0.3
+0.3
-0.1
+0.0
+1.1
carbon source
L-Citrulline
-0.2
+0.4
+0.4
+0.1
+0.7
carbon source
L-Citrulline
+0.5
+0.2
+0.1
+0.4
+0.7
stress
Fusidic 0.125 mg/ml
+0.0
+0.3
-0.0
+0.1
+1.7
stress
perchlorate 75 mM
+0.2
+0.3
+0.1
+0.5
+1.2
stress
nitrate 200 mM
+0.1
+0.5
+0.2
+0.6
+2.9
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