Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_21380 and AO353_21385 are separated by 70 nucleotidesAO353_21385 and AO353_21390 are separated by 176 nucleotidesAO353_21390 and AO353_21395 are separated by 165 nucleotidesAO353_21395 and AO353_21400 are separated by 325 nucleotides AO353_21380: AO353_21380 - rhizopine-binding protein, at 4,681,068 to 4,681,994 _21380 AO353_21385: AO353_21385 - m-Inositol ABC transporter, ATPase component (itaA) (from data), at 4,682,065 to 4,683,630 _21385 AO353_21390: AO353_21390 - m-Inositol ABC transporter, permease component (iatP) (from data), at 4,683,807 to 4,684,829 _21390 AO353_21395: AO353_21395 - porin, at 4,684,995 to 4,686,344 _21395 AO353_21400: AO353_21400 - conjugal transfer protein TraR, at 4,686,670 to 4,687,074 _21400
Group Condition AO353_21380 AO353_21385 AO353_21390 AO353_21395 AO353_21400
carbon source m-Inositol (C) -3.4 -3.6 -3.0 -0.0 -0.7
carbon source m-Inositol (C) -3.1 -3.6 -2.7 +0.0 +0.3
motility outer cut, LB soft agar motility assay +0.1 -0.4 -0.2 +0.3 -2.3
stress Rifampicin 0.005 mg/ml -0.6 -0.3 +0.2 +0.1 -1.9
stress Tetracycline 0.0016 mg/ml -0.6 -0.2 +0.2 -0.0 -1.7
carbon source L-Citrulline +0.1 +0.2 -0.3 -0.1 -2.1
stress copper (II) chloride 2.5 mM -0.1 -0.1 +0.0 -0.2 -1.6
motility outer cut, LB soft agar motility assay +0.1 -0.3 -0.4 +0.1 -1.3
carbon source propionate (C) -0.6 -0.2 +0.3 -0.0 -1.3
stress Cholin acetate 19 mM +0.1 -0.2 +0.1 -0.1 -1.5
pH Minimal media pH9 -0.1 +0.4 -0.4 -0.1 -1.3
carbon source acetate (C) -0.4 -0.1 -0.3 +0.5 -1.2
anaerobic Anaerobic, acetate donor; nitrate and iron -0.2 -0.5 -0.7 +0.2 -0.2
stress Doxycycline hyclate 0.0002 mg/ml -0.4 +0.2 -0.3 -0.1 -0.8
stress methylglyoxal 0.009 vol% -0.2 +0.0 +0.2 -0.3 -1.0
motility outer cut, LB soft agar motility assay +0.0 -0.5 +0.1 +0.3 -1.1
carbon source D-Fructose (C) +0.1 +0.0 +0.1 -0.1 -1.4
carbon source L-Alanine (C) +0.4 +0.1 -0.2 +0.2 -1.6
carbon source propionate (C) +0.3 -0.1 -0.1 +0.2 -1.1
temperature LB 20C -0.0 +0.2 +0.2 +0.0 -1.1
stress Paraquat dichloride 0.032 mg/mL -0.4 +0.0 -0.0 -0.2 +1.0
stress Cisplatin 0.006 mg/ml -0.3 +0.4 +0.2 -0.0 +1.0
anaerobic N1B4wt with N2E3m denitrifying replicate C +0.0 +0.1 +0.1 -0.3 +1.3
carbon source L-Isoleucine (C) +0.5 -0.3 +0.3 +0.1 +0.8
stress Cobalt chloride 0.32 mM +0.3 +0.3 -0.1 +0.0 +1.1
carbon source L-Citrulline -0.2 +0.4 +0.4 +0.1 +0.7
carbon source L-Citrulline +0.5 +0.2 +0.1 +0.4 +0.7
stress Fusidic 0.125 mg/ml +0.0 +0.3 -0.0 +0.1 +1.7
stress perchlorate 75 mM +0.2 +0.3 +0.1 +0.5 +1.2
stress nitrate 200 mM +0.1 +0.5 +0.2 +0.6 +2.9
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