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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_21375 and AO353_21380 are separated by 354 nucleotides
AO353_21380 and AO353_21385 are separated by 70 nucleotides
AO353_21385 and AO353_21390 are separated by 176 nucleotides
AO353_21390 and AO353_21395 are separated by 165 nucleotides
AO353_21375: AO353_21375 - oxidoreductase, at 4,679,661 to 4,680,713
_21375
AO353_21380: AO353_21380 - rhizopine-binding protein, at 4,681,068 to 4,681,994
_21380
AO353_21385: AO353_21385 - m-Inositol ABC transporter, ATPase component (itaA)
(from data)
, at 4,682,065 to 4,683,630
_21385
AO353_21390: AO353_21390 - m-Inositol ABC transporter, permease component (iatP)
(from data)
, at 4,683,807 to 4,684,829
_21390
AO353_21395: AO353_21395 - porin, at 4,684,995 to 4,686,344
_21395
Group
Condition
AO353
_21375
AO353
_21380
AO353
_21385
AO353
_21390
AO353
_21395
carbon source
m-Inositol (C)
-0.5
-3.4
-3.6
-3.0
-0.0
carbon source
m-Inositol (C)
-0.0
-3.1
-3.6
-2.7
+0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
-0.2
-0.5
-0.7
+0.2
stress
Spectinomycin 0.15 mg/ml
-0.2
-1.0
-0.1
-0.1
+0.0
pH
Minimal media pH9
-0.5
-0.0
+0.0
-0.5
-0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
-0.0
+0.2
-0.2
-0.4
carbon source
acetate (C)
-0.5
-0.4
-0.1
-0.3
+0.5
stress
Rifampicin 0.005 mg/ml
-0.2
-0.6
-0.3
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.1
-0.3
-0.4
+0.1
stress
Lomefloxacin 0.001 mM
+0.4
-0.7
-0.1
+0.1
-0.3
stress
Choline Lysine 12 mM
+0.0
-0.6
+0.1
+0.1
-0.2
stress
methylglyoxal 0.008 vol%
-0.2
-0.5
-0.1
+0.3
-0.1
lb
LB
+0.3
-0.5
+0.1
-0.4
+0.0
stress
Tetracycline 0.0016 mg/ml
+0.1
-0.6
-0.2
+0.2
-0.0
carbon source
L-Aspartic Acid (C)
+0.2
-0.7
-0.1
-0.0
+0.2
pH
Minimal media pH9
-0.2
-0.1
+0.4
-0.4
-0.1
carbon source
L-Ornithine
-0.5
+0.1
+0.3
-0.3
+0.1
motility
outer cut, LB soft agar motility assay
+0.2
+0.1
-0.4
-0.2
+0.3
survival
4C survival; 672 hrs
+0.4
-0.4
+0.2
-0.1
+0.3
carbon source
acetate (C)
-0.3
-0.3
+0.4
+0.1
+0.5
carbon source
L-Ornithine
+0.4
+0.3
+0.3
-0.1
-0.2
carbon source
L-Isoleucine (C)
+0.2
+0.5
-0.3
+0.3
+0.1
carbon source
L-Citrulline
+0.0
-0.2
+0.4
+0.4
+0.1
nitrogen source
Inosine (N)
+0.4
+0.2
-0.1
+0.4
-0.1
stress
Cisplatin 0.006 mg/ml
+0.7
-0.3
+0.4
+0.2
-0.0
motility
outer cut, LB soft agar motility assay
+1.1
+0.0
-0.5
+0.1
+0.3
denitrifying
Nitrate reduction, replicate C
+0.2
+0.5
-0.3
+0.3
+0.3
carbon source
L-Citrulline
+0.2
+0.5
+0.2
+0.1
+0.4
stress
perchlorate 75 mM
+0.4
+0.2
+0.3
+0.1
+0.5
stress
nitrate 200 mM
+0.3
+0.1
+0.5
+0.2
+0.6
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