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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_21280 and AO353_21285 are separated by 13 nucleotides
AO353_21285 and AO353_21290 are separated by 368 nucleotides
AO353_21290 and AO353_21295 are separated by 847 nucleotides
AO353_21295 and AO353_21300 are separated by 110 nucleotides
AO353_21280: AO353_21280 - metallophosphoesterase, at 4,656,596 to 4,657,567
_21280
AO353_21285: AO353_21285 - amidase, at 4,657,581 to 4,657,901
_21285
AO353_21290: AO353_21290 - hypothetical protein, at 4,658,270 to 4,658,539
_21290
AO353_21295: AO353_21295 - hypothetical protein, at 4,659,387 to 4,660,784
_21295
AO353_21300: AO353_21300 - glycolate oxidase iron-sulfur subunit, at 4,660,895 to 4,662,112
_21300
Group
Condition
AO353
_21280
AO353
_21285
AO353
_21290
AO353
_21295
AO353
_21300
carbon source
L-Isoleucine (C)
+0.3
-0.3
-1.5
+0.1
-0.1
stress
Cisplatin 0.006 mg/ml
+0.1
-0.8
-0.8
+0.2
-0.2
stress
Cholin acetate 10 mM
-0.3
+0.1
-1.0
-0.2
+0.1
stress
Lomefloxacin 0.001 mM
+0.1
-0.6
+0.7
-0.7
-0.7
stress
acetate 17 mM
+0.0
+0.1
-1.4
-0.0
+0.2
denitrifying
Nitrate reduction, replicate C
+0.2
-0.1
-1.2
+0.2
-0.3
carbon source
L-Citrulline (C)
-0.2
+0.1
-0.9
+0.3
-0.3
carbon source
D-Glucose
-0.2
-0.2
-1.5
+0.1
+0.8
stress
Chloride 500 mM
+0.2
+0.1
-0.9
+0.1
-0.4
nitrogen source
L-Arginine (N)
+0.0
-0.2
-0.9
-0.2
+0.4
denitrifying
Nitrate reduction, replicate B
-0.3
-0.9
-0.2
+0.2
+0.4
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
+0.2
-0.9
+0.2
-0.2
stress
methylglyoxal 0.009 vol%
-0.3
-0.1
+0.5
-0.3
-0.4
carbon source
L-Alanine (C)
+0.2
-0.6
+0.7
-0.4
-0.4
carbon source
L-Leucine (C)
+0.1
-1.1
+0.5
-0.1
+0.2
pH
Minimal media pH9
-0.0
+0.6
+0.2
-0.0
-1.2
nitrogen source
L-Glutamic (N)
+0.1
-0.0
-0.9
-0.1
+0.5
stress
Doxycycline hyclate 0.0002 mg/ml
+0.1
+0.5
-0.5
+0.2
-0.6
carbon source
L-Citrulline
-0.3
-0.2
-0.6
+0.1
+0.7
stress
nitrate 200 mM
+0.1
+0.3
-0.8
-0.1
+0.4
carbon source
acetate (C)
+0.1
+0.1
-0.7
-0.3
+0.8
carbon source
L-Ornithine
-0.6
+0.2
-0.1
+0.2
+0.8
nitrogen source
Ammonium chloride (N)
-0.1
-0.1
+0.7
-0.3
+0.4
stress
Cisplatin 0.006 mg/ml
-0.0
-0.7
+0.3
+0.4
+0.7
carbon source
L-Aspartic Acid (C)
+0.1
-0.3
+1.0
-0.2
+0.3
nitrogen source
Inosine (N)
-0.2
+0.1
+0.6
-0.1
+0.5
carbon source
L-Ornithine
-0.4
+0.0
-0.3
+0.2
+1.5
nitrogen source
Thymine (N)
+0.1
+0.2
+1.0
+0.2
+0.1
radiation
Ionizing radiation, 126.196 Gy,
+0.2
+0.0
+1.0
+0.1
+0.6
motility
outer cut, LB soft agar motility assay
-0.0
+0.2
+0.9
+0.1
+0.9
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AO353_21290
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