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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_21000 and AO353_21005 are separated by 14 nucleotides
AO353_21005 and AO353_21010 are separated by 87 nucleotides
AO353_21010 and AO353_21015 are separated by 92 nucleotides
AO353_21015 and AO353_21020 overlap by 4 nucleotides
AO353_21000: AO353_21000 - quinone oxidoreductase, at 4,590,023 to 4,591,003
_21000
AO353_21005: AO353_21005 - taurine dioxygenase, at 4,591,018 to 4,591,866
_21005
AO353_21010: AO353_21010 - transposase, at 4,591,954 to 4,593,006
_21010
AO353_21015: AO353_21015 - multidrug DMT transporter permease, at 4,593,099 to 4,594,430
_21015
AO353_21020: AO353_21020 - disulfide bond formation protein DsbA, at 4,594,427 to 4,595,092
_21020
Group
Condition
AO353
_21000
AO353
_21005
AO353
_21010
AO353
_21015
AO353
_21020
motility
outer cut, LB soft agar motility assay
-0.2
-0.6
-0.4
-0.4
-0.8
carbon source
L-Ornithine
-0.3
-0.1
-0.1
-0.3
-0.5
carbon source
L-Phenylalanine (C)
+0.1
-0.1
-0.7
-0.0
-0.5
carbon source
L-Alanine (C)
-0.0
+0.2
-0.7
-0.1
-0.5
carbon source
L-Ornithine
-0.6
+0.0
+0.1
-0.1
-0.5
carbon source
pyruvate (C)
+0.2
-0.1
-0.2
-0.3
-0.4
carbon source
L-Leucine (C)
-0.5
+0.2
-0.3
+0.2
-0.4
carbon source
D-Glucose
+0.1
+0.1
-0.7
+0.1
-0.3
stress
Sisomicin 0.008 mg/ml
+0.4
-0.2
-0.2
-0.5
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
-0.7
-0.2
+0.3
nitrogen source
NAG (N)
-0.3
-0.2
+0.2
+0.2
-0.3
nitrogen source
D-Serine (N)
+0.1
+0.3
-0.2
-0.1
-0.3
stress
Cholin acetate 19 mM
-0.1
-0.2
-0.0
+0.5
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.6
-0.6
+0.5
+0.3
+0.4
stress
Ceftazidime 0.12 mg/ml
-0.3
-0.0
-0.4
+0.3
+0.5
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.1
-0.1
-0.3
+0.4
+0.3
nitrogen source
Parabanic Acid (N)
-0.0
+0.3
+0.4
-0.6
+0.2
stress
Choline Lysine 12 mM
+0.1
-0.2
-0.3
+0.3
+0.4
motility
outer cut, LB soft agar motility assay
+0.2
+0.3
-0.1
-0.4
+0.3
stress
perchlorate 75 mM
+0.1
+0.1
+0.4
+0.2
-0.4
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
-0.2
+0.1
+0.3
+0.5
stress
Vanillin 1.25 mM
-0.1
+0.3
+0.1
-0.2
+0.5
stress
Gentamicin 0.006 mg/ml
+0.3
+0.1
-0.2
+0.3
+0.2
stress
Cobalt chloride 0.32 mM
-0.2
+0.0
+0.3
+0.1
+0.5
carbon source
L-Isoleucine (C)
-0.0
+0.4
+0.6
-0.1
-0.1
stress
Cholin acetate 10 mM
+0.1
-0.1
-0.1
+0.4
+0.5
stress
Thallium(I) acetate 0.016 mg/ml
+0.3
-0.0
-0.1
+0.2
+0.5
stress
acetate 34 mM
+0.0
+0.0
-0.1
+0.5
+0.6
stress
Cisplatin 0.006 mg/ml
+0.5
+0.1
+0.4
-0.4
+0.5
stress
Cisplatin 0.006 mg/ml
+0.6
+0.2
+0.1
-0.0
+0.9
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