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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_20835 and AO353_20840 overlap by 4 nucleotides
AO353_20840 and AO353_20845 are separated by 45 nucleotides
AO353_20845 and AO353_20850 are separated by 41 nucleotides
AO353_20850 and AO353_20855 are separated by 128 nucleotides
AO353_20835: AO353_20835 - Ribokinase (EC 2.7.1.15)
(from data)
, at 4,562,793 to 4,563,710
_20835
AO353_20840: AO353_20840 - ribose pyranase, at 4,563,707 to 4,564,111
_20840
AO353_20845: AO353_20845 - uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7)
(from data)
, at 4,564,157 to 4,565,185
_20845
AO353_20850: AO353_20850 - hypothetical protein, at 4,565,227 to 4,565,430
_20850
AO353_20855: AO353_20855 - hypothetical protein, at 4,565,559 to 4,565,864
_20855
Group
Condition
AO353
_20835
AO353
_20840
AO353
_20845
AO353
_20850
AO353
_20855
carbon source
Uridine (C)
-3.0
-0.3
-0.9
-0.1
-0.2
carbon source
propionate (C)
-0.6
-1.5
-0.4
-1.6
-0.4
carbon source
propionate (C)
-0.5
-0.7
+0.1
-2.3
-0.7
carbon source
D-Ribose (C)
-3.1
+0.2
+0.2
-0.1
-0.0
nitrogen source
Adenosine (N)
-1.2
-0.5
-1.2
+0.0
-0.0
carbon source
D-Ribose (C)
-2.9
+0.7
-0.0
-0.2
-0.0
carbon source
D-Alanine (C)
-0.4
-1.7
+0.0
-0.3
+0.0
carbon source
D-Glucose
-0.7
-0.7
-0.3
-0.4
-0.1
stress
Paraquat dichloride 0.032 mg/mL
+0.1
-1.2
-0.5
-0.3
-0.2
stress
Doxycycline hyclate 0.0006 mg/ml
-0.6
-0.3
-0.6
-0.7
+0.3
carbon source
L-Ornithine
-0.0
-2.4
+0.3
+0.2
-0.1
carbon source
L-Ornithine
+0.5
-1.7
+0.2
-0.9
-0.0
stress
Cholin acetate 19 mM
-0.7
-1.3
+0.4
-0.1
-0.2
stress
Cisplatin 0.006 mg/ml
-0.6
-0.3
-0.4
+0.2
-0.8
carbon source
L-Citrulline
+0.4
-1.8
-0.1
-0.2
+0.0
carbon source
L-Ornithine
-0.1
-1.5
+0.4
-0.2
-0.1
carbon source
Cytidine (C)
-1.5
+0.4
-0.2
-0.1
-0.2
carbon source
acetate (C)
+0.2
-1.2
+0.2
-0.2
-0.4
stress
Cisplatin 0.006 mg/ml
-0.5
+0.8
-0.5
-0.5
-0.4
pH
Minimal media pH9
-0.3
-1.2
+0.3
+0.1
+0.3
carbon source
L-Citrulline
-0.3
+0.5
+0.5
-0.4
-0.6
stress
Spectinomycin 0.2 mg/ml
+0.0
-1.2
+0.1
+0.3
+0.4
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
-1.2
+0.9
+0.3
+0.3
stress
Sisomicin 0.008 mg/ml
+0.6
-1.4
-0.0
+0.5
+0.6
stress
Cobalt chloride 0.16 mM
-0.3
+1.0
-0.2
+0.3
-0.4
nitrogen source
Parabanic Acid (N)
-1.0
+0.6
+0.3
+0.3
+0.2
pH
Minimal media pH9
+0.2
+1.5
+0.2
-0.3
+0.0
carbon source
L-Citrulline
+0.9
+0.7
+0.7
+0.1
+0.3
nitrogen source
Gly-Glu (N)
+4.0
+1.5
+0.1
+0.2
+0.3
nitrogen source
Gly-DL-Asp (N)
+5.6
+2.1
+0.2
+0.5
+0.2
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