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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_20820 and AO353_20825 overlap by 4 nucleotides
AO353_20825 and AO353_20830 are separated by 3 nucleotides
AO353_20830 and AO353_20835 are separated by 23 nucleotides
AO353_20835 and AO353_20840 overlap by 4 nucleotides
AO353_20820: AO353_20820 - sugar ABC transporter ATP-binding protein, at 4,559,219 to 4,560,772
_20820
AO353_20825: AO353_20825 - ABC transporter permease, at 4,560,769 to 4,561,746
_20825
AO353_20830: AO353_20830 - LacI family transcriptional regulator, at 4,561,750 to 4,562,769
_20830
AO353_20835: AO353_20835 - Ribokinase (EC 2.7.1.15)
(from data)
, at 4,562,793 to 4,563,710
_20835
AO353_20840: AO353_20840 - ribose pyranase, at 4,563,707 to 4,564,111
_20840
Group
Condition
AO353
_20820
AO353
_20825
AO353
_20830
AO353
_20835
AO353
_20840
carbon source
Uridine (C)
-2.3
-3.3
-2.3
-3.0
-0.3
carbon source
D-Ribose (C)
-2.3
-3.0
-1.9
-3.1
+0.2
carbon source
D-Ribose (C)
-3.2
-3.1
-1.6
-2.9
+0.7
carbon source
L-Ornithine
-0.2
-0.2
+0.1
-0.0
-2.4
carbon source
propionate (C)
+0.3
-0.4
-0.4
-0.6
-1.5
carbon source
acetate (C)
-0.2
-0.4
-0.9
+0.2
-1.2
carbon source
L-Ornithine
-0.0
-0.5
-0.3
-0.1
-1.5
stress
copper (II) chloride 2.5 mM
-0.2
-0.3
-0.2
-0.6
-1.1
carbon source
acetate (C)
-0.3
-0.4
-0.5
-0.7
-0.3
carbon source
Cytidine (C)
-0.1
-0.5
-0.5
-1.5
+0.4
stress
Cholin acetate 19 mM
+0.0
+0.0
-0.2
-0.7
-1.3
carbon source
L-Glutamic (C)
-0.1
-0.1
-0.3
-1.0
-0.7
carbon source
L-Citrulline
-0.1
-0.4
-0.2
+0.4
-1.8
carbon source
L-Proline (C)
+0.0
-0.1
-0.5
-0.6
-0.7
carbon source
D-Alanine (C)
+0.2
-0.0
-0.0
-0.4
-1.7
carbon source
L-Ornithine
+0.1
-0.4
-0.3
+0.5
-1.7
survival
4C survival; 672 hrs
+0.6
-0.0
-0.9
-1.0
-0.4
carbon source
Ethanol (C)
+0.3
-0.3
-0.2
-0.3
-0.9
carbon source
propionate (C)
+0.5
-0.2
-0.6
-0.5
-0.7
stress
Rifampicin 0.005 mg/ml
+0.2
+0.2
-0.4
-0.3
-1.1
carbon source
D-Glucose
+0.2
-0.4
+0.1
-0.7
-0.7
stress
Cisplatin 0.006 mg/ml
-0.4
-0.5
-0.7
-0.5
+0.8
stress
Sisomicin 0.008 mg/ml
+0.0
+0.1
-0.1
+0.6
-1.4
nitrogen source
Parabanic Acid (N)
+0.1
+0.1
-0.5
-1.0
+0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.0
+0.4
+0.2
-0.2
-1.2
carbon source
L-Asparagine (C)
+0.1
-0.2
-0.9
-0.3
+0.9
pH
Minimal media pH9
-0.1
-0.3
-0.8
+0.2
+1.5
nitrogen source
Adenosine (N)
+3.7
+1.0
-0.6
-1.2
-0.5
nitrogen source
Gly-Glu (N)
-0.4
+2.3
+3.7
+4.0
+1.5
nitrogen source
Gly-DL-Asp (N)
-0.5
+3.0
+5.0
+5.6
+2.1
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