Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_20820 and AO353_20825 overlap by 4 nucleotidesAO353_20825 and AO353_20830 are separated by 3 nucleotidesAO353_20830 and AO353_20835 are separated by 23 nucleotidesAO353_20835 and AO353_20840 overlap by 4 nucleotides AO353_20820: AO353_20820 - sugar ABC transporter ATP-binding protein, at 4,559,219 to 4,560,772 _20820 AO353_20825: AO353_20825 - ABC transporter permease, at 4,560,769 to 4,561,746 _20825 AO353_20830: AO353_20830 - LacI family transcriptional regulator, at 4,561,750 to 4,562,769 _20830 AO353_20835: AO353_20835 - Ribokinase (EC 2.7.1.15) (from data), at 4,562,793 to 4,563,710 _20835 AO353_20840: AO353_20840 - ribose pyranase, at 4,563,707 to 4,564,111 _20840
Group Condition AO353_20820 AO353_20825 AO353_20830 AO353_20835 AO353_20840
carbon source Uridine (C) -2.3 -3.3 -2.3 -3.0 -0.3
carbon source D-Ribose (C) -2.3 -3.0 -1.9 -3.1 +0.2
carbon source D-Ribose (C) -3.2 -3.1 -1.6 -2.9 +0.7
carbon source L-Ornithine -0.2 -0.2 +0.1 -0.0 -2.4
carbon source propionate (C) +0.3 -0.4 -0.4 -0.6 -1.5
carbon source acetate (C) -0.2 -0.4 -0.9 +0.2 -1.2
carbon source L-Ornithine -0.0 -0.5 -0.3 -0.1 -1.5
stress copper (II) chloride 2.5 mM -0.2 -0.3 -0.2 -0.6 -1.1
carbon source acetate (C) -0.3 -0.4 -0.5 -0.7 -0.3
carbon source Cytidine (C) -0.1 -0.5 -0.5 -1.5 +0.4
stress Cholin acetate 19 mM +0.0 +0.0 -0.2 -0.7 -1.3
carbon source L-Glutamic (C) -0.1 -0.1 -0.3 -1.0 -0.7
carbon source L-Citrulline -0.1 -0.4 -0.2 +0.4 -1.8
carbon source L-Proline (C) +0.0 -0.1 -0.5 -0.6 -0.7
carbon source D-Alanine (C) +0.2 -0.0 -0.0 -0.4 -1.7
carbon source L-Ornithine +0.1 -0.4 -0.3 +0.5 -1.7
survival 4C survival; 672 hrs +0.6 -0.0 -0.9 -1.0 -0.4
carbon source Ethanol (C) +0.3 -0.3 -0.2 -0.3 -0.9
carbon source propionate (C) +0.5 -0.2 -0.6 -0.5 -0.7
stress Rifampicin 0.005 mg/ml +0.2 +0.2 -0.4 -0.3 -1.1
carbon source D-Glucose +0.2 -0.4 +0.1 -0.7 -0.7
stress Cisplatin 0.006 mg/ml -0.4 -0.5 -0.7 -0.5 +0.8
stress Sisomicin 0.008 mg/ml +0.0 +0.1 -0.1 +0.6 -1.4
nitrogen source Parabanic Acid (N) +0.1 +0.1 -0.5 -1.0 +0.6
anaerobic Anaerobic, acetate donor; nitrate and iron +0.0 +0.4 +0.2 -0.2 -1.2
carbon source L-Asparagine (C) +0.1 -0.2 -0.9 -0.3 +0.9
pH Minimal media pH9 -0.1 -0.3 -0.8 +0.2 +1.5
nitrogen source Adenosine (N) +3.7 +1.0 -0.6 -1.2 -0.5
nitrogen source Gly-Glu (N) -0.4 +2.3 +3.7 +4.0 +1.5
nitrogen source Gly-DL-Asp (N) -0.5 +3.0 +5.0 +5.6 +2.1
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