Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_20810 and AO353_20815 are separated by 235 nucleotidesAO353_20815 and AO353_20820 are separated by 57 nucleotidesAO353_20820 and AO353_20825 overlap by 4 nucleotidesAO353_20825 and AO353_20830 are separated by 3 nucleotides AO353_20810: AO353_20810 - hypothetical protein, at 4,557,517 to 4,557,972 _20810 AO353_20815: AO353_20815 - LacI family transcriptional regulator, at 4,558,208 to 4,559,161 _20815 AO353_20820: AO353_20820 - sugar ABC transporter ATP-binding protein, at 4,559,219 to 4,560,772 _20820 AO353_20825: AO353_20825 - ABC transporter permease, at 4,560,769 to 4,561,746 _20825 AO353_20830: AO353_20830 - LacI family transcriptional regulator, at 4,561,750 to 4,562,769 _20830
Group Condition AO353_20810 AO353_20815 AO353_20820 AO353_20825 AO353_20830
carbon source D-Ribose (C) -0.5 -1.9 -3.2 -3.1 -1.6
carbon source D-Ribose (C) +0.1 -2.2 -2.3 -3.0 -1.9
carbon source Uridine (C) +0.4 -1.4 -2.3 -3.3 -2.3
carbon source L-Alanine (C) -2.9 -0.7 +0.3 -0.4 -0.2
carbon source acetate (C) -1.7 -0.8 -0.3 -0.4 -0.5
carbon source L-Citrulline -0.5 -1.3 -0.1 -0.4 -0.2
stress Fusidic 0.125 mg/ml +0.4 -2.4 +0.1 -0.1 -0.2
carbon source L-Ornithine -1.0 -0.3 -0.0 -0.5 -0.3
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.3 -1.4 -0.2 -0.1 -0.3
motility outer cut, LB soft agar motility assay -0.8 -0.4 -0.3 +0.1 -0.7
stress Tetracycline 0.0016 mg/ml -0.3 -1.2 -0.2 -0.1 -0.4
motility outer cut, LB soft agar motility assay -1.4 +0.5 -0.2 -0.2 -0.5
carbon source L-Arginine (C) -1.5 +0.3 +0.2 -0.3 -0.1
nitrogen source L-Histidine (N) +0.5 -1.3 -0.1 -0.1 -0.4
stress Sisomicin 0.008 mg/ml -2.3 +1.0 +0.0 +0.1 -0.1
stress Cisplatin 0.006 mg/ml -0.1 +0.4 -0.4 -0.5 -0.7
carbon source acetate (C) +0.4 +0.1 -0.2 -0.4 -0.9
carbon source L-Serine (C) -1.0 +0.7 +0.1 -0.1 -0.7
survival 4C survival; 672 hrs +0.5 -0.9 +0.6 -0.0 -0.9
anaerobic Anaerobic, acetate donor; nitrate and iron -0.2 -1.3 +0.0 +0.4 +0.2
carbon source L-Leucine (C) -0.9 +0.5 -0.2 +0.1 -0.3
carbon source L-Citrulline +1.7 -2.1 -0.0 -0.3 -0.1
stress copper (II) chloride 2.5 mM -1.5 +0.8 +0.1 -0.1 +0.1
carbon source L-Citrulline +0.8 -0.4 -0.1 -0.8 +0.1
carbon source propionate (C) -0.5 +0.5 +0.5 -0.2 -0.6
carbon source L-Ornithine +0.6 +0.6 +0.1 -0.4 -0.3
carbon source L-Citrulline +1.4 +0.5 -0.1 -0.1 +0.2
nitrogen source Gly-Glu (N) +0.2 -1.4 -0.4 +2.3 +3.7
nitrogen source Gly-DL-Asp (N) -1.0 -0.5 -0.5 +3.0 +5.0
nitrogen source Adenosine (N) +0.1 +2.7 +3.7 +1.0 -0.6
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