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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_20755 and AO353_20760 are separated by 16 nucleotides
AO353_20760 and AO353_20765 are separated by 162 nucleotides
AO353_20765 and AO353_20770 are separated by 159 nucleotides
AO353_20770 and AO353_20775 are separated by 250 nucleotides
AO353_20755: AO353_20755 - serine/threonine protein phosphatase, at 4,550,260 to 4,550,982
_20755
AO353_20760: AO353_20760 - hypothetical protein, at 4,550,999 to 4,551,181
_20760
AO353_20765: AO353_20765 - NADPH-dependent FMN reductase, at 4,551,344 to 4,551,892
_20765
AO353_20770: AO353_20770 - hypothetical protein, at 4,552,052 to 4,552,252
_20770
AO353_20775: AO353_20775 - alpha/beta hydrolase, at 4,552,503 to 4,553,204
_20775
Group
Condition
AO353
_20755
AO353
_20760
AO353
_20765
AO353
_20770
AO353
_20775
stress
Cisplatin 0.006 mg/ml
-0.1
-1.0
-0.6
+0.6
-0.5
carbon source
L-Ornithine
-0.2
+0.0
-0.4
-0.6
-0.2
carbon source
propionate (C)
-0.2
-0.4
-0.1
-0.4
-0.2
nitrogen source
Gly-Glu (N)
-0.5
-0.3
-0.0
-0.3
-0.1
stress
Lomefloxacin 0.001 mM
-0.3
+0.7
+0.3
-1.5
+0.0
carbon source
L-Alanine (C)
-0.3
+0.1
+0.3
-1.0
+0.2
stress
Ceftazidime 0.12 mg/ml
-0.2
-0.2
-0.4
+0.3
-0.2
stress
acetate 34 mM
-0.0
-0.5
-0.4
+0.5
-0.2
carbon source
Putrescine (C)
-0.0
+0.2
-0.3
-0.6
-0.1
motility
outer cut, LB soft agar motility assay
-0.2
+0.3
-0.7
+0.6
-0.6
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.0
-0.3
-0.3
+0.4
-0.3
carbon source
L-Citrulline
+0.1
-0.0
-0.7
+0.3
-0.1
motility
outer cut, LB soft agar motility assay
-0.3
+0.3
-0.7
+0.1
+0.1
stress
Tetracycline 0.0016 mg/ml
-0.1
-0.2
+0.4
-0.2
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.1
-0.8
-0.5
+0.5
+0.4
carbon source
L-Serine (C)
+0.3
-0.6
+0.1
-0.2
+0.1
stress
Cholin acetate 10 mM
+0.2
-0.5
-0.2
+0.2
+0.0
stress
Nalidixic 0.004 mg/ml
+0.1
-0.5
-0.3
+0.4
+0.1
stress
Cisplatin 0.006 mg/ml
-0.3
+0.3
-1.3
+0.8
+0.3
survival
4C survival; 360 hrs
+0.2
-0.3
+0.4
+0.0
-0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.2
-0.4
-0.1
+0.6
-0.3
carbon source
D-Glucose
-0.1
+0.6
-1.0
+0.3
+0.1
carbon source
acetate (C)
-0.1
-0.2
+0.2
+0.5
-0.5
carbon source
L-Citrulline
+0.2
+0.2
+0.4
-0.4
-0.3
stress
acetate 17 mM
+0.2
+0.0
-0.2
+0.5
-0.2
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.1
-0.4
+0.2
+0.4
+0.1
carbon source
L-Ornithine
+0.1
+0.5
-0.1
+0.3
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
+0.2
+0.2
-0.4
+0.7
-0.2
pH
Minimal media pH9
+0.1
-0.3
+0.6
+0.4
+0.2
carbon source
L-Citrulline
+0.1
+0.4
+0.2
+0.3
+0.3
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