Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_20230 and AO353_20235 are separated by 201 nucleotidesAO353_20235 and AO353_20240 are separated by 97 nucleotidesAO353_20240 and AO353_20245 are separated by 111 nucleotidesAO353_20245 and AO353_20250 are separated by 472 nucleotides AO353_20230: AO353_20230 - cytochrome B, at 4,447,866 to 4,448,423 _20230 AO353_20235: AO353_20235 - phosphonoacetaldehyde hydrolase, at 4,448,625 to 4,449,452 _20235 AO353_20240: AO353_20240 - 2-aminoethylphosphonate--pyruvate aminotransferase, at 4,449,550 to 4,450,659 _20240 AO353_20245: AO353_20245 - LysR family transcriptional regulator, at 4,450,771 to 4,451,637 _20245 AO353_20250: AO353_20250 - hypothetical protein, at 4,452,110 to 4,453,480 _20250
Group Condition AO353_20230 AO353_20235 AO353_20240 AO353_20245 AO353_20250
carbon source L-Alanine (C) -0.2 -0.3 -0.1 -1.3 -0.2
carbon source L-Citrulline +0.1 -0.2 -0.5 -1.2 -0.1
carbon source L-Leucine (C) -0.3 -0.1 +0.1 -0.7 -0.3
nitrogen source L-Phenylalanine (N) -0.1 +0.0 -0.1 -0.6 -0.3
motility outer cut, LB soft agar motility assay -0.3 +0.0 -0.5 -0.3 +0.0
nitrogen source Uridine (N) -0.2 -0.1 -0.4 -0.3 +0.1
motility outer cut, LB soft agar motility assay +0.0 -0.8 -0.1 +0.1 -0.0
stress methylglyoxal 0.009 vol% -0.1 -0.3 +0.2 -0.3 -0.2
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.0 -0.2 +0.3 -0.3 -0.4
stress Doxycycline hyclate 0.0006 mg/ml -0.0 -0.2 +0.0 -0.8 +0.3
carbon source L-Phenylalanine (C) +0.2 -0.3 -0.1 -0.5 +0.2
stress Paraquat dichloride 0.032 mg/mL +0.1 +0.1 +0.2 -0.6 -0.3
stress Cisplatin 0.006 mg/ml -0.1 +0.3 +0.1 -0.8 -0.0
carbon source L-Ornithine +0.2 +0.0 +0.1 -0.8 +0.2
pH Minimal media pH9 +0.0 +0.1 -0.1 -0.6 +0.3
carbon source succinate (C) +0.1 +0.1 -0.1 -0.6 +0.1
stress Cisplatin 0.006 mg/ml -0.3 +0.3 -0.3 -0.2 +0.2
stress Ceftazidime 0.12 mg/ml +0.1 +0.2 +0.1 -0.6 +0.1
stress A22 0.01 mg/ml -0.2 +0.3 +0.2 -0.4 +0.0
carbon source L-Isoleucine (C) -0.2 +0.4 +0.1 +0.2 -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron +0.5 +0.1 +0.0 -0.4 +0.2
denitrifying Nitrate reduction, replicate B +0.2 -0.4 +0.3 +0.3 +0.2
motility outer cut, LB soft agar motility assay +0.2 -0.1 -0.3 +0.5 +0.3
carbon source L-Ornithine +0.2 +0.4 -0.2 +0.3 -0.0
carbon source L-Citrulline +0.2 -0.1 +0.2 +0.4 -0.0
carbon source L-Citrulline +0.3 +0.6 +0.1 -0.2 +0.0
stress Thallium(I) acetate 0.016 mg/ml +0.2 +0.3 +0.3 -0.2 +0.1
radiation Ionizing radiation, 126.196 Gy, +0.2 +0.2 +0.1 +0.5 -0.2
carbon source D-Glucose +0.2 +0.6 +0.3 -0.1 -0.1
denitrifying Nitrate reduction, replicate C +0.2 -0.2 +0.3 +0.6 +0.2
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