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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_20100 and AO353_20105 are separated by 87 nucleotides
AO353_20105 and AO353_20110 are separated by 325 nucleotides
AO353_20110 and AO353_20115 are separated by 4 nucleotides
AO353_20115 and AO353_20120 are separated by 135 nucleotides
AO353_20100: AO353_20100 - hypothetical protein, at 4,421,326 to 4,421,835
_20100
AO353_20105: AO353_20105 - serine/threonine protein kinase, at 4,421,923 to 4,423,155
_20105
AO353_20110: AO353_20110 - MFS transporter, at 4,423,481 to 4,424,635
_20110
AO353_20115: AO353_20115 - LysR family transcriptional regulator, at 4,424,640 to 4,425,539
_20115
AO353_20120: AO353_20120 - hypothetical protein, at 4,425,675 to 4,425,926
_20120
Group
Condition
AO353
_20100
AO353
_20105
AO353
_20110
AO353
_20115
AO353
_20120
motility
outer cut, LB soft agar motility assay
-0.4
-0.7
-0.6
+0.6
-1.5
stress
Doxycycline hyclate 0.0006 mg/ml
+0.7
-0.2
-1.0
-0.9
-1.2
carbon source
L-Citrulline
-0.5
-0.1
-0.6
-1.7
+0.2
stress
acetate 17 mM
-0.2
-0.4
-0.3
-0.4
-0.7
nitrogen source
Adenosine (N)
+0.0
+0.2
-1.3
-0.3
-0.6
stress
copper (II) chloride 2.5 mM
-0.2
+0.1
+0.1
-0.9
-1.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-1.2
+0.3
-0.3
-0.4
-0.3
carbon source
D-Serine (C)
-0.3
+0.2
-0.4
-0.4
-0.6
carbon source
L-Valine (C)
-0.2
-1.3
+0.3
+0.4
-0.6
stress
Sisomicin 0.008 mg/ml
-0.5
+0.2
+0.2
-1.4
+0.2
carbon source
Ethanol (C)
-0.3
-0.6
-0.1
+0.4
-0.7
carbon source
D-Alanine (C)
-0.2
-0.4
-0.2
+0.4
-0.7
carbon source
acetate (C)
+0.1
-0.4
+0.4
-0.1
-1.0
carbon source
propionate (C)
+0.6
+0.0
+0.0
-0.4
-1.3
stress
Cisplatin 0.006 mg/ml
-1.1
-0.5
+0.5
+0.3
-0.2
carbon source
D-Glucose
+0.2
+0.3
+0.1
-1.4
-0.1
motility
outer cut, LB soft agar motility assay
+0.5
-0.4
-0.1
-0.9
+0.1
stress
Tetracycline 0.0016 mg/ml
-0.5
+0.0
-0.2
-0.6
+0.8
denitrifying
Nitrate reduction, replicate B
+0.1
-0.5
+0.5
+0.3
-0.6
carbon source
L-Ornithine
+0.5
-0.7
-0.1
+0.5
-0.1
carbon source
a-Ketoglutaric (C)
-0.0
+0.3
+0.3
-0.7
+0.5
carbon source
D-Fructose (C)
+0.1
-0.5
+0.3
+0.6
-0.3
stress
Lomefloxacin 0.001 mM
+0.2
-0.8
+0.2
+0.3
+0.5
nitrogen source
L-tyrosine (N)
-0.5
-0.2
+0.2
+0.3
+0.6
stress
Spectinomycin 0.2 mg/ml
-0.2
-0.3
-0.2
+0.6
+0.8
stress
methylglyoxal 0.009 vol%
+0.2
-0.3
-0.4
+0.0
+1.1
denitrifying
Nitrate reduction, replicate C
-0.6
+0.5
+0.4
+0.4
+0.1
carbon source
L-Citrulline
-0.5
-0.1
+0.3
+0.6
+0.7
carbon source
L-Citrulline
+0.1
+0.5
+0.5
+0.2
+0.6
carbon source
L-Glutamine (C)
+0.2
+0.4
+0.4
+0.8
+0.6
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