Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_20080 and AO353_20085 are separated by 25 nucleotidesAO353_20085 and AO353_20090 are separated by 133 nucleotidesAO353_20090 and AO353_20095 overlap by 4 nucleotidesAO353_20095 and AO353_20100 are separated by 122 nucleotides AO353_20080: AO353_20080 - nitric oxide synthase, at 4,416,364 to 4,418,586 _20080 AO353_20085: AO353_20085 - Tat pathway signal protein, at 4,418,612 to 4,419,082 _20085 AO353_20090: AO353_20090 - transcriptional regulator, at 4,419,216 to 4,419,875 _20090 AO353_20095: AO353_20095 - histidine kinase, at 4,419,872 to 4,421,203 _20095 AO353_20100: AO353_20100 - hypothetical protein, at 4,421,326 to 4,421,835 _20100
Group Condition AO353_20080 AO353_20085 AO353_20090 AO353_20095 AO353_20100
nitrogen source D-Glucosamine Hydrochloride (N) -0.0 -0.3 -0.1 -3.1 -0.1
pH Minimal media pH9 +0.1 -0.2 +0.0 -3.1 -0.2
nitrogen source Uridine (N) -0.1 -0.3 -0.2 -2.5 -0.1
pH Minimal media pH9 +0.0 +0.0 -0.2 -3.2 +0.3
stress copper (II) chloride 2.5 mM -0.0 -0.7 -0.2 -1.8 -0.2
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.1 -0.0 -0.1 -2.6 +0.2
nitrogen source Gly-Glu (N) -0.1 -0.1 -0.1 -2.5 +0.1
carbon source propionate (C) +0.1 -0.1 +0.2 -3.2 +0.4
carbon source butyrate (C) -0.0 -0.3 -0.1 -1.9 -0.2
motility outer cut, LB soft agar motility assay -0.2 -0.2 -0.2 -1.3 -0.4
stress copper (II) chloride 2.5 mM -0.1 -0.4 -0.1 -1.6 -0.0
carbon source a-Ketoglutaric (C) -0.0 +0.0 -0.1 -2.0 -0.0
denitrifying Nitrate reduction, replicate C +0.3 -0.2 -0.2 -1.3 -0.6
carbon source L-Histidine (C) +0.1 -0.1 -0.1 -1.6 -0.5
carbon source L-Valine (C) -0.1 +0.0 +0.0 -1.8 -0.2
carbon source Trisodium citrate (C) +0.0 -0.2 -0.0 -1.8 -0.0
carbon source L-Arginine (C) +0.2 -0.4 -0.2 -1.4 -0.2
nitrogen source L-Histidine (N) -0.1 -0.0 -0.1 -2.0 +0.4
nitrogen source L-Threonine (N) +0.1 -0.1 -0.1 -2.0 +0.3
carbon source L-Leucine (C) -0.2 -0.7 +0.1 -0.8 +0.1
nitrogen source L-Arginine (N) -0.1 -0.0 -0.0 -1.8 +0.4
motility outer cut, LB soft agar motility assay -0.4 -0.6 +0.4 -1.2 +0.4
nitrogen source L-Lysine (N) -0.0 -0.0 +0.0 -1.9 +0.4
stress Cisplatin 0.006 mg/ml -0.2 -0.2 +0.3 -0.3 -1.1
carbon source propionate (C) -0.1 -0.0 +0.0 -1.7 +0.6
anaerobic Anaerobic, acetate donor; nitrate and iron -0.3 +0.5 +0.6 +0.2 -1.2
carbon source L-Citrulline -0.1 +0.2 -0.1 +1.2 -0.5
carbon source L-Citrulline -0.0 -0.1 +0.0 +1.5 -0.5
carbon source acetate (C) -0.0 -0.2 +0.3 +2.8 -0.2
carbon source acetate (C) -0.1 -0.4 -0.1 +4.0 +0.1
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