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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_20080 and AO353_20085 are separated by 25 nucleotides
AO353_20085 and AO353_20090 are separated by 133 nucleotides
AO353_20090 and AO353_20095 overlap by 4 nucleotides
AO353_20095 and AO353_20100 are separated by 122 nucleotides
AO353_20080: AO353_20080 - nitric oxide synthase, at 4,416,364 to 4,418,586
_20080
AO353_20085: AO353_20085 - Tat pathway signal protein, at 4,418,612 to 4,419,082
_20085
AO353_20090: AO353_20090 - transcriptional regulator, at 4,419,216 to 4,419,875
_20090
AO353_20095: AO353_20095 - histidine kinase, at 4,419,872 to 4,421,203
_20095
AO353_20100: AO353_20100 - hypothetical protein, at 4,421,326 to 4,421,835
_20100
Group
Condition
AO353
_20080
AO353
_20085
AO353
_20090
AO353
_20095
AO353
_20100
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.0
-0.3
-0.1
-3.1
-0.1
pH
Minimal media pH9
+0.1
-0.2
+0.0
-3.1
-0.2
nitrogen source
Uridine (N)
-0.1
-0.3
-0.2
-2.5
-0.1
pH
Minimal media pH9
+0.0
+0.0
-0.2
-3.2
+0.3
stress
copper (II) chloride 2.5 mM
-0.0
-0.7
-0.2
-1.8
-0.2
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.1
-0.0
-0.1
-2.6
+0.2
nitrogen source
Gly-Glu (N)
-0.1
-0.1
-0.1
-2.5
+0.1
carbon source
propionate (C)
+0.1
-0.1
+0.2
-3.2
+0.4
carbon source
butyrate (C)
-0.0
-0.3
-0.1
-1.9
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
-0.2
-0.2
-1.3
-0.4
stress
copper (II) chloride 2.5 mM
-0.1
-0.4
-0.1
-1.6
-0.0
carbon source
a-Ketoglutaric (C)
-0.0
+0.0
-0.1
-2.0
-0.0
denitrifying
Nitrate reduction, replicate C
+0.3
-0.2
-0.2
-1.3
-0.6
carbon source
L-Histidine (C)
+0.1
-0.1
-0.1
-1.6
-0.5
carbon source
L-Valine (C)
-0.1
+0.0
+0.0
-1.8
-0.2
carbon source
Trisodium citrate (C)
+0.0
-0.2
-0.0
-1.8
-0.0
carbon source
L-Arginine (C)
+0.2
-0.4
-0.2
-1.4
-0.2
nitrogen source
L-Histidine (N)
-0.1
-0.0
-0.1
-2.0
+0.4
nitrogen source
L-Threonine (N)
+0.1
-0.1
-0.1
-2.0
+0.3
carbon source
L-Leucine (C)
-0.2
-0.7
+0.1
-0.8
+0.1
nitrogen source
L-Arginine (N)
-0.1
-0.0
-0.0
-1.8
+0.4
motility
outer cut, LB soft agar motility assay
-0.4
-0.6
+0.4
-1.2
+0.4
nitrogen source
L-Lysine (N)
-0.0
-0.0
+0.0
-1.9
+0.4
stress
Cisplatin 0.006 mg/ml
-0.2
-0.2
+0.3
-0.3
-1.1
carbon source
propionate (C)
-0.1
-0.0
+0.0
-1.7
+0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.3
+0.5
+0.6
+0.2
-1.2
carbon source
L-Citrulline
-0.1
+0.2
-0.1
+1.2
-0.5
carbon source
L-Citrulline
-0.0
-0.1
+0.0
+1.5
-0.5
carbon source
acetate (C)
-0.0
-0.2
+0.3
+2.8
-0.2
carbon source
acetate (C)
-0.1
-0.4
-0.1
+4.0
+0.1
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