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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_19915 and AO353_19920 overlap by 4 nucleotides
AO353_19920 and AO353_19925 are separated by 105 nucleotides
AO353_19925 and AO353_19930 are separated by 138 nucleotides
AO353_19930 and AO353_19935 are separated by 331 nucleotides
AO353_19915: AO353_19915 - RND transporter, at 4,376,916 to 4,378,409
_19915
AO353_19920: AO353_19920 - ABC transporter permease, at 4,378,406 to 4,379,548
_19920
AO353_19925: AO353_19925 - mRNA 3'-end processing factor, at 4,379,654 to 4,381,030
_19925
AO353_19930: AO353_19930 - ATPase, at 4,381,169 to 4,381,666
_19930
AO353_19935: AO353_19935 - molecular chaperone GroEL, at 4,381,998 to 4,383,614
_19935
Group
Condition
AO353
_19915
AO353
_19920
AO353
_19925
AO353
_19930
AO353
_19935
motility
outer cut, LB soft agar motility assay
-0.7
-0.2
+0.1
-0.2
-0.6
carbon source
L-Citrulline
-0.2
-0.2
-0.1
-0.5
-0.5
carbon source
L-Citrulline
-0.4
-0.1
-0.2
-0.4
-0.1
denitrifying
Nitrate reduction, replicate C
-0.5
+0.0
-0.1
-0.1
-0.4
carbon source
L-Citrulline
-0.2
-0.2
-0.3
+0.0
-0.3
carbon source
butyrate (C)
-0.1
-0.1
+0.0
-0.4
-0.3
carbon source
L-Ornithine
-0.0
-0.1
-0.1
-0.5
-0.2
carbon source
D-Glucose
-0.1
+0.1
-0.2
-0.4
-0.2
stress
methylglyoxal 0.009 vol%
-0.1
-0.0
-0.3
-0.5
+0.0
stress
Furfuryl Alcohol 0.25 vol%
-0.1
-0.0
+0.0
-0.5
-0.0
carbon source
L-Tryptophan (C)
-0.2
-0.1
+0.2
-0.5
+0.0
carbon source
m-Inositol (C)
-0.1
-0.1
+0.0
-0.6
-0.0
carbon source
L-Ornithine
-0.1
-0.1
-0.5
+0.1
-0.0
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.1
-0.2
+0.1
-0.2
-0.2
motility
outer cut, LB soft agar motility assay
-0.8
+0.2
+0.1
-0.1
+0.2
carbon source
L-Leucine (C)
-0.0
-0.2
+0.2
+0.1
-0.4
carbon source
L-Citrulline
-0.1
-0.1
-0.2
+0.3
-0.2
carbon source
acetate (C)
+0.3
+0.2
-0.1
-0.4
-0.3
carbon source
L-Phenylalanine (C)
-0.3
-0.1
+0.3
-0.0
-0.2
carbon source
L-Alanine (C)
+0.0
-0.2
+0.3
-0.0
-0.2
stress
Nickel (II) chloride 0.625 mM
-0.2
+0.1
-0.1
+0.4
-0.1
stress
Benzalkonium Chloride 0.01 mg/ml
-0.2
-0.1
+0.1
+0.1
+0.2
stress
Ceftazidime 0.12 mg/ml
-0.0
-0.2
+0.1
+0.1
+0.3
stress
Cholin acetate 38 mM
-0.2
-0.1
+0.2
+0.2
+0.1
nitrogen source
L-Serine (N)
-0.0
+0.1
+0.1
+0.4
-0.1
lb
LB
-0.2
+0.1
+0.2
+0.2
+0.3
carbon source
D-Ribose (C)
+0.0
+0.1
-0.1
+0.3
+0.2
carbon source
Ethanol (C)
-0.1
+0.1
+0.1
+0.3
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.0
-0.0
+0.5
-0.2
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.0
-0.1
+0.1
+0.3
+0.5
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AO353_19925
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