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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_19900 and AO353_19905 are separated by 74 nucleotides
AO353_19905 and AO353_19910 overlap by 4 nucleotides
AO353_19910 and AO353_19915 overlap by 1 nucleotides
AO353_19915 and AO353_19920 overlap by 4 nucleotides
AO353_19900: AO353_19900 - universal stress protein UspA, at 4,374,327 to 4,375,238
_19900
AO353_19905: AO353_19905 - ABC transporter, at 4,375,313 to 4,376,032
_19905
AO353_19910: AO353_19910 - glycosyl hydrolase family 18, at 4,376,029 to 4,376,916
_19910
AO353_19915: AO353_19915 - RND transporter, at 4,376,916 to 4,378,409
_19915
AO353_19920: AO353_19920 - ABC transporter permease, at 4,378,406 to 4,379,548
_19920
Group
Condition
AO353
_19900
AO353
_19905
AO353
_19910
AO353
_19915
AO353
_19920
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-2.0
-0.0
-0.0
-0.1
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
-0.7
+0.0
-0.2
-0.3
motility
outer cut, LB soft agar motility assay
+0.1
-0.5
+0.0
-0.7
-0.2
carbon source
L-Citrulline
-0.5
-0.4
+0.0
-0.1
-0.1
carbon source
L-Citrulline
-0.1
-0.6
+0.1
-0.4
-0.1
stress
acetate 68 mM
-0.2
-0.5
+0.0
+0.0
-0.3
carbon source
L-Phenylalanine (C)
+0.2
-0.8
+0.1
-0.3
-0.1
stress
Lomefloxacin 0.001 mM
-0.5
-0.3
-0.1
+0.1
-0.0
carbon source
L-Tryptophan (C)
-0.0
-0.5
+0.1
-0.2
-0.1
stress
Choline chloride 268.5 mM
-0.1
-0.5
-0.0
-0.1
-0.1
carbon source
L-Citrulline
-0.1
+0.0
-0.3
-0.2
-0.2
stress
A22 0.002 mg/ml
+0.0
-0.4
-0.1
-0.2
-0.1
denitrifying
Nitrate reduction, replicate C
-0.2
+0.1
-0.1
-0.5
+0.0
stress
Cisplatin 0.006 mg/ml
-0.3
-0.5
+0.0
+0.1
+0.2
carbon source
L-Alanine (C)
+0.2
-0.5
+0.1
+0.0
-0.2
nitrogen source
Gly-DL-Asp (N)
-0.1
-0.4
+0.2
+0.1
-0.1
pH
Minimal media pH9
-0.0
-0.6
+0.1
+0.2
+0.0
carbon source
L-Ornithine
-0.1
+0.4
-0.3
-0.3
+0.0
pH
Minimal media pH9
-0.1
+0.3
+0.1
-0.3
-0.1
carbon source
L-Leucine (C)
+0.2
-0.2
+0.2
-0.0
-0.2
stress
Cobalt chloride 0.32 mM
-0.1
-0.3
-0.1
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.5
+0.2
-0.8
+0.2
carbon source
Glycerol (C)
+0.2
+0.1
-0.1
-0.3
-0.1
carbon source
acetate (C)
-0.2
-0.4
-0.0
+0.3
+0.2
stress
Cisplatin 0.006 mg/ml
-0.2
-0.3
+0.0
+0.4
+0.0
stress
Chloramphenicol 0.0025 mg/ml
+0.2
-0.3
+0.1
-0.1
+0.1
carbon source
D-Glucose
-0.1
+0.4
-0.1
-0.1
-0.0
stress
Nickel (II) chloride 0.625 mM
-0.2
+0.3
+0.1
-0.2
+0.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.2
+0.6
+0.1
-0.1
-0.0
stress
Fusidic 0.125 mg/ml
+0.1
+0.5
-0.0
+0.2
+0.0
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