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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_19780 and AO353_19785 are separated by 148 nucleotides
AO353_19785 and AO353_19790 are separated by 389 nucleotides
AO353_19790 and AO353_19795 are separated by 153 nucleotides
AO353_19795 and AO353_19800 are separated by 110 nucleotides
AO353_19780: AO353_19780 - histidine kinase, at 4,347,131 to 4,348,444
_19780
AO353_19785: AO353_19785 - chemotaxis protein, at 4,348,593 to 4,350,740
_19785
AO353_19790: AO353_19790 - sodium:proton antiporter, at 4,351,130 to 4,352,449
_19790
AO353_19795: AO353_19795 - chemotaxis protein, at 4,352,603 to 4,354,285
_19795
AO353_19800: AO353_19800 - protease, at 4,354,396 to 4,355,721
_19800
Group
Condition
AO353
_19780
AO353
_19785
AO353
_19790
AO353
_19795
AO353
_19800
stress
Nickel (II) chloride 0.625 mM
-0.1
+0.5
-2.7
-0.4
-0.1
stress
Nickel (II) chloride 0.625 mM
+0.2
+0.4
-2.5
-0.3
-0.1
carbon source
acetate (C)
-1.3
+0.3
-0.2
+0.1
-0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.0
-0.5
-0.4
-0.2
-0.3
carbon source
L-Phenylalanine (C)
-0.5
-0.1
-0.3
-0.3
-0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.1
-0.1
-1.2
+0.1
+0.0
stress
Gentamicin 0.006 mg/ml
-0.5
+0.2
-0.8
+0.1
-0.2
carbon source
L-Citrulline
-0.4
+0.1
-0.7
+0.0
+0.0
carbon source
L-Leucine (C)
-0.8
+0.0
+0.2
+0.0
-0.3
stress
Lomefloxacin 0.001 mM
+0.3
-0.2
-0.3
+0.0
-0.5
stress
Paraquat dichloride 0.032 mg/mL
-0.6
+0.1
-0.3
+0.0
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
+0.4
-1.0
+0.1
-0.0
stress
Sisomicin 0.008 mg/ml
-0.1
-0.1
-0.7
+0.2
+0.3
stress
perchlorate 75 mM
-0.4
-0.3
+0.0
+0.2
+0.2
carbon source
L-Isoleucine (C)
-0.5
+0.3
+0.4
-0.1
-0.2
carbon source
L-Ornithine
+0.4
-0.3
+0.1
-0.1
-0.2
carbon source
D-Glucose
-0.2
+0.5
+0.1
-0.4
-0.1
carbon source
L-Ornithine
-0.4
-0.1
+0.2
-0.1
+0.4
stress
Benzalkonium Chloride 0.012 mg/ml
+0.7
+0.0
-0.6
-0.1
+0.1
nitrogen source
Parabanic Acid (N)
+0.1
+0.1
+0.5
-0.3
-0.2
stress
Chloramphenicol 0.004 mg/ml
+0.4
-0.2
-0.2
-0.1
+0.3
motility
outer cut, LB soft agar motility assay
-0.7
+0.6
+0.2
-0.1
+0.5
motility
outer cut, LB soft agar motility assay
+0.8
+0.2
-0.4
-0.0
+0.0
motility
outer cut, LB soft agar motility assay
+0.4
-0.2
+0.1
+0.4
+0.0
stress
methylglyoxal 0.009 vol%
+0.4
-0.1
+0.5
+0.2
-0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.6
+0.0
-0.2
+0.1
+0.3
lb
LB
+0.7
+0.1
+0.1
+0.1
+0.1
stress
Thallium(I) acetate 0.016 mg/ml
+0.4
+0.3
+0.0
+0.1
+0.3
stress
Cisplatin 0.006 mg/ml
+0.4
-0.3
+0.8
+0.4
-0.1
stress
Cisplatin 0.006 mg/ml
+0.7
-0.1
+1.3
+0.1
+0.1
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