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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_19260 and AO353_19265 are separated by 75 nucleotides
AO353_19265 and AO353_19270 are separated by 328 nucleotides
AO353_19270 and AO353_19275 overlap by 4 nucleotides
AO353_19275 and AO353_19280 are separated by 520 nucleotides
AO353_19260: AO353_19260 - molybdenum cofactor biosynthesis protein MoaA, at 4,222,258 to 4,223,484
_19260
AO353_19265: AO353_19265 - hypothetical protein, at 4,223,560 to 4,223,754
_19265
AO353_19270: AO353_19270 - LuxR family transcriptional regulator, at 4,224,083 to 4,224,742
_19270
AO353_19275: AO353_19275 - histidine kinase, at 4,224,739 to 4,225,632
_19275
AO353_19280: AO353_19280 - hypothetical protein, at 4,226,153 to 4,226,623
_19280
Group
Condition
AO353
_19260
AO353
_19265
AO353
_19270
AO353
_19275
AO353
_19280
motility
outer cut, LB soft agar motility assay
-1.3
-2.0
-1.3
-2.3
-4.0
motility
outer cut, LB soft agar motility assay
-1.0
-1.7
-0.9
-2.2
-2.0
motility
outer cut, LB soft agar motility assay
-0.9
-0.9
-2.3
-0.8
-1.1
carbon source
casaminos (C)
+0.2
-0.6
-0.4
-0.1
-1.7
carbon source
L-Alanine (C)
+0.0
-0.8
+0.1
-0.7
-1.3
temperature
LB 30C
-0.1
-0.5
-0.2
-0.1
-1.3
stress
Sisomicin 0.008 mg/ml
+0.1
+0.1
-0.4
-0.5
-1.5
carbon source
L-Citrulline
+0.2
-0.0
+0.2
-0.3
-2.1
survival
4C survival; 360 hrs
-0.3
-0.1
-0.5
+0.1
-1.2
carbon source
Ethanol (C)
-0.0
-0.5
+0.1
-0.0
-1.5
carbon source
L-Citrulline (C)
-0.1
-0.3
-0.2
-0.2
-1.1
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-1.2
-0.2
+0.1
-0.4
-0.0
carbon source
D-Glucose
-0.1
-0.5
+0.0
-0.5
-0.6
stress
Tetracycline 0.0016 mg/ml
+0.2
-0.1
-0.4
+0.1
-1.5
carbon source
butyrate (C)
+0.1
-0.3
-0.3
+0.2
-1.3
carbon source
L-Serine (C)
+0.2
-0.7
-0.1
-0.1
-0.8
stress
Cholin acetate 19 mM
+0.2
-0.2
+0.2
-0.5
-1.1
nitrogen source
Parabanic Acid (N)
+0.1
-0.0
+0.2
-0.1
-1.4
stress
Chloramphenicol 0.0025 mg/ml
+0.1
-0.1
-0.3
+0.3
-1.2
carbon source
Tween 20 (C)
-0.1
+0.3
+0.4
+0.1
-1.4
pH
Minimal media pH9
-0.3
-0.7
+0.3
-0.4
+0.5
carbon source
L-Aspartic Acid (C)
+0.1
+0.7
+0.3
-0.1
-1.4
stress
Chlorite 0.16 mM
+0.3
+0.2
+0.5
+0.0
-1.1
stress
Cisplatin 0.006 mg/ml
+0.2
-0.5
-0.2
-0.3
+0.7
carbon source
L-Tryptophan (C)
+0.1
-1.0
+0.4
+0.1
+0.5
carbon source
D-Glucose
-0.3
-0.5
+0.1
+0.0
+1.0
survival
4C survival; 672 hrs
-0.3
+0.2
-0.4
+1.0
-0.1
carbon source
L-Ornithine
+0.0
-0.5
-0.2
+0.5
+0.8
carbon source
L-Citrulline
-0.3
-0.0
-0.5
-0.2
+2.0
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+0.7
+0.3
+0.0
+0.7
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