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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_19105 and AO353_19110 are separated by 64 nucleotides
AO353_19110 and AO353_19115 are separated by 123 nucleotides
AO353_19115 and AO353_19120 are separated by 156 nucleotides
AO353_19120 and AO353_19125 are separated by 156 nucleotides
AO353_19105: AO353_19105 - hypothetical protein, at 4,190,653 to 4,190,868
_19105
AO353_19110: AO353_19110 - cytoplasmic protein, at 4,190,933 to 4,192,162
_19110
AO353_19115: AO353_19115 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 4,192,286 to 4,193,632
_19115
AO353_19120: AO353_19120 - spermidine synthase, at 4,193,789 to 4,194,544
_19120
AO353_19125: AO353_19125 - enoyl-CoA hydratase, at 4,194,701 to 4,195,492
_19125
Group
Condition
AO353
_19105
AO353
_19110
AO353
_19115
AO353
_19120
AO353
_19125
carbon source
L-Citrulline
N.D.
-0.7
-1.0
-0.0
N.D.
carbon source
L-Citrulline
N.D.
-0.2
-0.5
-0.3
N.D.
stress
Chloramphenicol 0.004 mg/ml
N.D.
-0.2
-0.1
-0.7
N.D.
carbon source
L-Phenylalanine (C)
N.D.
-0.2
-0.8
-0.0
N.D.
carbon source
L-Ornithine
N.D.
-0.1
-0.7
-0.2
N.D.
carbon source
L-Citrulline
N.D.
-0.4
-0.6
+0.1
N.D.
anaerobic
Anaerobic, acetate donor; nitrate and iron
N.D.
-0.5
-0.1
-0.2
N.D.
stress
Cisplatin 0.006 mg/ml
N.D.
-0.1
+0.2
-0.8
N.D.
carbon source
propionate (C)
N.D.
-0.0
-0.2
-0.5
N.D.
carbon source
propionate (C)
N.D.
+0.0
-0.2
-0.5
N.D.
carbon source
L-Ornithine
N.D.
-0.6
-0.3
+0.4
N.D.
carbon source
D-Glucose
N.D.
-0.2
-0.5
+0.2
N.D.
stress
Rifampicin 0.005 mg/ml
N.D.
+0.2
-0.2
-0.4
N.D.
carbon source
acetate (C)
N.D.
-0.2
-0.5
+0.2
N.D.
carbon source
m-Inositol (C)
N.D.
-0.5
+0.1
+0.0
N.D.
carbon source
L-Aspartic Acid (C)
N.D.
-0.5
+0.2
-0.0
N.D.
stress
methylglyoxal 0.009 vol%
N.D.
+0.2
-0.6
+0.1
N.D.
carbon source
D-Fructose (C)
N.D.
-0.2
-0.3
+0.3
N.D.
nitrogen source
Parabanic Acid (N)
N.D.
+0.1
-0.5
+0.1
N.D.
carbon source
L-Ornithine
N.D.
-0.4
-0.3
+0.4
N.D.
nitrogen source
L-Glutamine (N)
N.D.
+0.2
-0.4
+0.0
N.D.
carbon source
Glycerol (C)
N.D.
-0.3
-0.2
+0.2
N.D.
stress
Fusidic 0.125 mg/ml
N.D.
-0.2
+0.3
-0.2
N.D.
nitrogen source
nitrite (N)
N.D.
+0.2
-0.5
+0.3
N.D.
carbon source
D-Fructose (C)
N.D.
+0.1
-0.4
+0.3
N.D.
stress
Furfuryl Alcohol 0.25 vol%
N.D.
+0.3
-0.2
-0.1
N.D.
stress
nitrate 200 mM
N.D.
-0.0
-0.3
+0.5
N.D.
stress
Cholin acetate 10 mM
N.D.
-0.3
+0.3
+0.3
N.D.
stress
Nalidixic 0.004 mg/ml
N.D.
-0.1
+0.4
+0.3
N.D.
motility
outer cut, LB soft agar motility assay
N.D.
+0.4
+0.4
+0.4
N.D.
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