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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_18805 and AO353_18810 overlap by 1 nucleotides
AO353_18810 and AO353_18815 are separated by 12 nucleotides
AO353_18815 and AO353_18820 are separated by 50 nucleotides
AO353_18820 and AO353_18825 are separated by 33 nucleotides
AO353_18805: AO353_18805 - chemotaxis protein CheY, at 4,135,674 to 4,136,801
_18805
AO353_18810: AO353_18810 - flagellar motor protein, at 4,136,801 to 4,137,541
_18810
AO353_18815: AO353_18815 - flagellar motor protein MotD, at 4,137,554 to 4,138,441
_18815
AO353_18820: AO353_18820 - cobalamin biosynthesis protein CobQ, at 4,138,492 to 4,139,280
_18820
AO353_18825: AO353_18825 - chemotaxis protein CheW, at 4,139,314 to 4,140,210
_18825
Group
Condition
AO353
_18805
AO353
_18810
AO353
_18815
AO353
_18820
AO353
_18825
motility
outer cut, LB soft agar motility assay
-3.4
-2.2
-2.7
-1.8
-2.6
motility
outer cut, LB soft agar motility assay
-2.2
-3.2
-2.1
-1.6
-2.4
motility
outer cut, LB soft agar motility assay
-1.7
-1.7
-1.8
-2.0
-1.4
survival
4C survival; 672 hrs
-0.3
-0.8
-1.4
-0.2
-1.5
survival
4C survival; 360 hrs
-0.6
-0.9
-0.9
-0.4
-0.7
survival
4C survival; 192 hrs
-0.5
-0.8
-0.7
-0.1
-0.5
carbon source
L-Valine (C)
-0.5
-0.5
+0.5
-0.4
-0.0
pH
Minimal media pH9
-0.2
-0.0
-0.5
-0.4
+0.2
nitrogen source
nitrite (N)
-0.2
-0.4
+0.2
-0.3
-0.1
nitrogen source
Parabanic Acid (N)
-0.3
-0.3
+0.2
-0.3
+0.0
stress
Choline chloride 358 mM
-0.2
-0.6
+0.2
+0.0
-0.1
nitrogen source
Putrescine (N)
-0.4
-0.3
+0.1
-0.2
+0.3
stress
Benzalkonium Chloride 0.01 mg/ml
-0.0
-0.5
+0.2
+0.1
-0.3
nitrogen source
Gly-Glu (N)
-0.4
-0.2
-0.3
+0.2
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
+0.2
+0.1
-0.4
-0.4
carbon source
D-Glucose
-0.3
+0.3
+0.1
+0.1
-0.4
stress
acetate 34 mM
-0.1
-0.5
+0.2
+0.2
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
-0.3
+0.4
+0.3
-0.2
denitrifying
Nitrate reduction, replicate B
+0.0
-0.4
+0.6
-0.1
+0.0
carbon source
L-Citrulline
-0.3
+0.5
+0.6
+0.1
-0.7
denitrifying
Nitrate reduction, replicate C
+0.0
-0.4
+0.7
-0.0
-0.1
carbon source
casaminos (C)
+0.3
-0.6
+0.2
+0.0
+0.3
stress
Rifampicin 0.005 mg/ml
+0.2
+0.4
+0.2
-0.1
-0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.4
-0.1
+0.7
-0.4
-0.2
lb
LB
-0.1
-0.2
+0.3
+0.6
-0.1
carbon source
L-Citrulline
+0.1
+0.4
+0.4
-0.1
-0.1
stress
Cholin acetate 19 mM
+0.4
-0.1
+0.1
+0.4
+0.2
radiation
Ionizing radiation, 126.196 Gy,
+0.3
+0.2
+0.5
-0.1
+0.2
stress
Furfuryl Alcohol 0.25 vol%
+0.1
+0.1
+0.3
+0.4
+0.2
stress
methylglyoxal 0.009 vol%
+0.2
+0.3
+0.6
+0.4
+0.2
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