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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_18650 and AO353_18655 are separated by 24 nucleotides
AO353_18655 and AO353_18660 are separated by 170 nucleotides
AO353_18660 and AO353_18665 are separated by 110 nucleotides
AO353_18665 and AO353_18670 overlap by 1 nucleotides
AO353_18650: AO353_18650 - flagellar export chaperone FliS, at 4,104,875 to 4,105,264
_18650
AO353_18655: AO353_18655 - flagellar assembly protein FliT, at 4,105,289 to 4,105,585
_18655
AO353_18660: AO353_18660 - AAA family ATPase, at 4,105,756 to 4,107,231
_18660
AO353_18665: AO353_18665 - histidine kinase, at 4,107,342 to 4,108,559
_18665
AO353_18670: AO353_18670 - Fis family transcriptional regulator, at 4,108,559 to 4,109,959
_18670
Group
Condition
AO353
_18650
AO353
_18655
AO353
_18660
AO353
_18665
AO353
_18670
motility
outer cut, LB soft agar motility assay
-3.4
+0.1
-3.2
-3.0
-2.4
motility
outer cut, LB soft agar motility assay
-2.2
+0.2
-3.0
-2.7
-2.3
survival
4C survival; 360 hrs
-2.2
-1.2
-2.5
-1.2
-1.0
survival
4C survival; 672 hrs
-2.0
-1.4
-2.4
-0.8
-0.8
motility
outer cut, LB soft agar motility assay
-2.0
+1.6
-2.2
-2.4
-1.9
survival
4C survival; 192 hrs
-1.2
-0.6
-1.7
-0.9
-0.6
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.2
-1.0
-1.0
+0.3
+0.1
nitrogen source
Parabanic Acid (N)
-0.1
-1.4
-0.2
+0.3
-0.3
stress
Cholin acetate 10 mM
-0.2
-0.8
-0.7
+0.1
-0.0
stress
Cholin acetate 19 mM
-0.2
-1.3
-0.6
+0.2
+0.5
stress
nitrate 200 mM
+0.5
-0.3
-1.2
-0.0
-0.2
stress
perchlorate 75 mM
+0.3
-0.8
-0.9
+0.2
+0.2
stress
acetate 34 mM
-0.2
-0.7
-0.6
+0.1
+0.3
stress
Cisplatin 0.006 mg/ml
-0.1
-0.7
+0.3
-0.5
+0.3
stress
acetate 17 mM
-0.3
+0.1
-0.8
+0.3
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
-0.3
+0.5
+0.5
-0.8
carbon source
D-Glucose
+0.4
-0.4
+0.7
-0.2
+0.2
denitrifying
Nitrate reduction, replicate C
+0.1
+0.7
+0.4
-0.2
-0.2
carbon source
L-Citrulline
+0.3
-0.1
+0.7
+0.4
-0.2
stress
Rifampicin 0.005 mg/ml
+0.3
-0.4
+0.8
+0.5
+0.1
carbon source
D-Lactate (C)
-0.0
+0.5
+0.8
+0.4
-0.2
carbon source
L-Citrulline
+0.1
+0.7
+0.7
+0.3
-0.2
carbon source
L-Citrulline
+0.1
-0.0
+0.8
+0.5
+0.3
carbon source
L-Isoleucine (C)
+0.2
+0.9
+0.4
+0.2
-0.1
nitrogen source
Inosine (N)
+0.1
+0.9
+0.6
+0.2
-0.0
carbon source
D-Glucose
+0.2
+0.5
+0.9
+0.6
+0.2
carbon source
acetate (C)
+0.2
+0.7
+0.5
+0.7
+0.3
carbon source
pyruvate (C)
+0.2
+1.0
+1.3
+0.3
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
+0.5
+0.5
+0.8
+0.6
+0.6
carbon source
a-Ketoglutaric (C)
+0.8
+1.4
+1.7
+0.4
+0.6
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