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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_18470 and AO353_18475 are separated by 193 nucleotides
AO353_18475 and AO353_18480 overlap by 44 nucleotides
AO353_18480 and AO353_18485 are separated by 120 nucleotides
AO353_18485 and AO353_18490 are separated by 37 nucleotides
AO353_18470: AO353_18470 - hypothetical protein, at 4,067,939 to 4,068,250
_18470
AO353_18475: AO353_18475 - AraC family transcriptional regulator, at 4,068,444 to 4,069,472
_18475
AO353_18480: AO353_18480 - potassium transporter TrkH, at 4,069,429 to 4,070,883
_18480
AO353_18485: AO353_18485 - nitroreductase, at 4,071,004 to 4,071,570
_18485
AO353_18490: AO353_18490 - histidine kinase, at 4,071,608 to 4,072,954
_18490
Group
Condition
AO353
_18470
AO353
_18475
AO353
_18480
AO353
_18485
AO353
_18490
carbon source
L-Citrulline
-0.3
+0.0
-0.6
-1.7
+0.1
stress
Sisomicin 0.008 mg/ml
-0.5
-0.5
-1.8
+0.1
+0.4
stress
Nickel (II) chloride 0.625 mM
-0.2
-0.1
+0.0
-1.8
-0.0
stress
1-ethyl-3-methylimidazolium chloride 170 mM
+0.4
+0.2
-2.3
-0.1
-0.1
carbon source
L-Leucine (C)
-0.0
-0.7
-0.4
-0.3
-0.3
motility
outer cut, LB soft agar motility assay
+0.2
+0.1
-0.2
-1.8
+0.1
radiation
Ionizing radiation, 126.196 Gy,
-0.3
-0.2
-0.3
-0.6
-0.1
stress
Spectinomycin 0.2 mg/ml
-0.1
-0.4
-0.8
-0.1
-0.1
carbon source
L-Citrulline
+0.2
+0.3
-1.2
-0.4
-0.2
carbon source
L-Ornithine
-0.5
-0.5
-0.5
+0.2
+0.0
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.4
-0.2
-0.6
-0.8
-0.0
stress
Chloride 500 mM
+0.1
-0.1
-0.9
-0.4
+0.2
nitrogen source
Parabanic Acid (N)
-0.5
-0.5
+0.0
-0.3
+0.2
stress
Spectinomycin 0.15 mg/ml
+0.1
+0.2
-0.8
-0.5
-0.1
motility
outer cut, LB soft agar motility assay
-0.6
+0.1
-0.5
-0.1
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.4
-0.3
-0.6
-0.6
+0.2
stress
nitrate 200 mM
+0.0
+0.0
+0.9
-1.6
-0.0
carbon source
L-Phenylalanine (C)
+0.2
-0.1
-0.1
-0.9
+0.3
stress
Gentamicin 0.006 mg/ml
+0.0
+0.2
-1.1
+0.3
+0.0
carbon source
L-Citrulline
+0.6
-0.2
-0.6
-0.2
-0.1
carbon source
L-Citrulline
-0.3
-0.1
-0.8
+0.7
+0.1
survival
4C survival; 672 hrs
-0.3
+0.2
-0.6
+0.3
+0.2
motility
outer cut, LB soft agar motility assay
+0.2
-0.2
-0.6
+0.6
-0.2
stress
Cisplatin 0.006 mg/ml
-0.7
-0.1
+0.1
+0.4
+0.3
stress
methylglyoxal 0.009 vol%
-0.3
+0.0
+1.2
-0.5
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
-0.3
-0.1
+1.2
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
+0.8
+0.2
-0.4
+0.1
carbon source
acetate (C)
+0.1
+0.3
-0.4
+0.5
+0.6
lb
LB
+0.2
+0.2
-0.1
+1.1
-0.3
stress
Fusidic 0.125 mg/ml
+0.2
-0.3
+0.6
+0.3
+0.2
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