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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_18395 and AO353_18400 are separated by 385 nucleotides
AO353_18400 and AO353_18405 are separated by 197 nucleotides
AO353_18405 and AO353_18410 are separated by 12 nucleotides
AO353_18410 and AO353_18415 are separated by 52 nucleotides
AO353_18395: AO353_18395 - sodium:solute symporter, at 4,051,567 to 4,052,946
_18395
AO353_18400: AO353_18400 - agmatinase, at 4,053,332 to 4,054,282
_18400
AO353_18405: AO353_18405 - LysR family transcriptional regulator, at 4,054,480 to 4,055,373
_18405
AO353_18410: AO353_18410 - hypothetical protein, at 4,055,386 to 4,055,985
_18410
AO353_18415: AO353_18415 - hypothetical protein, at 4,056,038 to 4,057,978
_18415
Group
Condition
AO353
_18395
AO353
_18400
AO353
_18405
AO353
_18410
AO353
_18415
carbon source
L-Citrulline
-0.4
-0.7
-0.7
-0.9
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
-0.2
-0.3
-1.1
-0.0
carbon source
D-Glucose
+0.1
-0.5
-0.2
-0.9
-0.2
survival
4C survival; 672 hrs
-0.2
-0.4
-0.3
-0.9
+0.1
carbon source
L-Leucine (C)
+0.1
-1.0
-0.2
-0.3
-0.2
carbon source
L-Phenylalanine (C)
+0.2
-0.8
-0.1
-0.4
-0.4
denitrifying
Nitrate reduction, replicate C
-0.1
-1.0
+0.2
-0.5
-0.1
stress
Cisplatin 0.006 mg/ml
+0.2
-0.0
+0.1
-1.1
-0.5
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
-0.1
-0.3
-0.7
-0.2
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.1
-0.3
-0.4
-0.4
-0.2
carbon source
D-Ribose (C)
-0.2
-1.0
+0.1
-0.2
+0.1
carbon source
L-Citrulline
+0.1
-0.5
-0.6
+0.2
-0.3
stress
Fusidic 0.125 mg/ml
-0.2
-0.3
+0.2
-0.4
-0.3
carbon source
L-Alanine (C)
-0.1
-1.2
-0.1
+0.6
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.3
-0.5
-0.1
-0.4
-0.1
carbon source
Uridine (C)
-0.1
-0.6
+0.2
-0.4
+0.1
stress
Cobalt chloride 0.16 mM
-0.1
+0.4
-0.2
-0.6
-0.1
nitrogen source
Parabanic Acid (N)
+0.2
-0.8
-0.1
-0.1
+0.2
carbon source
L-Citrulline
-0.2
+0.1
-0.3
+0.4
-0.4
carbon source
D-Glucose
-0.1
-0.5
-0.2
+0.4
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-0.4
+0.3
+0.4
-0.5
stress
Cisplatin 0.006 mg/ml
+0.2
-0.7
-0.0
+0.8
-0.2
carbon source
acetate (C)
+0.2
+0.7
+0.3
-1.1
+0.0
carbon source
L-Ornithine
-0.3
+1.2
-0.2
-0.2
-0.3
stress
Doxycycline hyclate 0.0006 mg/ml
+0.3
+0.1
-0.4
+0.6
+0.0
stress
Tetracycline 0.0016 mg/ml
-0.0
+0.4
-0.2
+0.5
+0.1
stress
Rifampicin 0.005 mg/ml
+0.2
+0.5
+0.2
+0.5
-0.2
carbon source
L-Ornithine
-0.1
+1.5
+0.0
+0.1
-0.4
carbon source
L-Ornithine
-0.2
+1.8
-0.1
+0.2
-0.5
motility
outer cut, LB soft agar motility assay
+0.3
-0.0
-0.0
+1.2
-0.1
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