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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_18380 and AO353_18385 are separated by 103 nucleotides
AO353_18385 and AO353_18390 are separated by 430 nucleotides
AO353_18390 and AO353_18395 are separated by 87 nucleotides
AO353_18395 and AO353_18400 are separated by 385 nucleotides
AO353_18380: AO353_18380 - hypothetical protein, at 4,048,115 to 4,049,293
_18380
AO353_18385: AO353_18385 - LysR family transcriptional regulator, at 4,049,397 to 4,050,323
_18385
AO353_18390: AO353_18390 - MBL fold metallo-hydrolase, at 4,050,754 to 4,051,479
_18390
AO353_18395: AO353_18395 - sodium:solute symporter, at 4,051,567 to 4,052,946
_18395
AO353_18400: AO353_18400 - agmatinase, at 4,053,332 to 4,054,282
_18400
Group
Condition
AO353
_18380
AO353
_18385
AO353
_18390
AO353
_18395
AO353
_18400
stress
Cisplatin 0.006 mg/ml
-0.1
-0.8
-0.9
+0.2
-0.7
carbon source
L-Citrulline
-0.4
-0.0
-0.4
-0.4
-0.7
carbon source
L-Alanine (C)
-0.1
-0.1
-0.0
-0.1
-1.2
nitrogen source
Parabanic Acid (N)
-0.1
-0.2
-0.3
+0.2
-0.8
carbon source
D-Glucose
-0.3
-0.2
-0.3
+0.1
-0.5
carbon source
L-Citrulline
-0.0
-0.3
-0.3
-0.1
-0.4
stress
nitrate 200 mM
-0.4
-0.0
-0.2
-0.1
-0.4
carbon source
Cytidine (C)
-0.1
-0.1
-0.1
+0.1
-0.8
denitrifying
Nitrate reduction, replicate C
+0.1
+0.3
-0.2
-0.1
-1.0
nitrogen source
L-Lysine (N)
-0.1
-0.1
-0.2
+0.1
-0.7
carbon source
D-Glucose
+0.1
-0.4
+0.0
-0.1
-0.5
carbon source
L-Citrulline
+0.0
+0.1
-0.6
+0.1
-0.5
nitrogen source
Gly-Glu (N)
-0.1
+0.1
-0.1
+0.1
-0.7
carbon source
D-Ribose (C)
+0.2
+0.1
+0.1
-0.2
-1.0
carbon source
L-Phenylalanine (C)
-0.2
-0.1
+0.1
+0.2
-0.8
stress
Thallium(I) acetate 0.008 mg/ml
-0.0
-0.2
-0.1
+0.3
-0.5
carbon source
L-Aspartic Acid (C)
-0.1
+0.1
+0.3
-0.0
-0.7
carbon source
L-Leucine (C)
+0.2
+0.4
+0.2
+0.1
-1.0
carbon source
L-Ornithine
+0.3
-0.0
-0.3
-0.4
+0.5
survival
4C survival; 672 hrs
+0.1
+0.2
+0.3
-0.2
-0.4
stress
copper (II) chloride 2.5 mM
-0.1
-0.4
+0.2
+0.0
+0.5
motility
outer cut, LB soft agar motility assay
+0.3
+0.4
+0.1
+0.2
-0.4
carbon source
L-Ornithine
+0.0
-0.1
-0.1
-0.3
+1.2
stress
Sisomicin 0.008 mg/ml
+0.2
+0.1
+0.2
-0.1
+0.5
carbon source
L-Isoleucine (C)
+0.1
+0.3
+0.4
+0.2
-0.1
stress
Rifampicin 0.005 mg/ml
+0.3
-0.1
+0.1
+0.2
+0.5
carbon source
L-Ornithine
-0.4
+0.1
-0.2
-0.2
+1.8
carbon source
acetate (C)
+0.5
-0.0
-0.1
+0.2
+0.7
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
-0.2
+1.0
-0.1
+0.3
carbon source
L-Ornithine
+0.4
-0.0
-0.1
-0.1
+1.5
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