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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_18310 and AO353_18315 are separated by 320 nucleotides
AO353_18315 and AO353_18320 are separated by 140 nucleotides
AO353_18320 and AO353_18325 are separated by 315 nucleotides
AO353_18325 and AO353_18330 are separated by 293 nucleotides
AO353_18310: AO353_18310 - hypothetical protein, at 4,036,872 to 4,038,212
_18310
AO353_18315: AO353_18315 - hypothetical protein, at 4,038,533 to 4,039,114
_18315
AO353_18320: AO353_18320 - hypothetical protein, at 4,039,255 to 4,039,698
_18320
AO353_18325: AO353_18325 - hypothetical protein, at 4,040,014 to 4,040,397
_18325
AO353_18330: AO353_18330 - short-chain dehydrogenase, at 4,040,691 to 4,040,957
_18330
Group
Condition
AO353
_18310
AO353
_18315
AO353
_18320
AO353
_18325
AO353
_18330
pH
Minimal media pH9
+0.1
-0.2
-0.1
-2.2
N.D.
pH
Minimal media pH7
+0.1
+0.1
-0.4
-1.9
N.D.
nitrogen source
L-Arginine (N)
-0.1
-0.1
+0.2
-2.1
N.D.
carbon source
L-Citrulline
-0.2
-0.4
+0.6
-1.8
N.D.
carbon source
Ethanol (C)
-0.0
-0.4
-0.6
-0.6
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
+0.0
-0.2
-1.3
-0.2
N.D.
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.2
-0.0
-0.2
-1.2
N.D.
stress
Fusidic 0.125 mg/ml
-0.1
+0.0
-0.1
-1.3
N.D.
stress
Dimethyl Sulfoxide 7.5 vol%
-0.2
-0.1
-0.2
-1.0
N.D.
lb
LB
-0.0
+0.2
-0.9
-0.8
N.D.
carbon source
L-Ornithine
-0.5
-0.4
-0.5
-0.1
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
+0.1
-0.4
-1.0
N.D.
survival
4C survival; 192 hrs
+0.3
-0.0
-0.2
-1.4
N.D.
carbon source
L-Leucine (C)
+0.4
+0.1
-0.0
-1.8
N.D.
carbon source
casaminos (C)
+0.2
+0.1
+0.2
-1.5
N.D.
nitrogen source
Inosine (N)
+0.1
+0.3
-0.2
-1.1
N.D.
nitrogen source
L-tyrosine (N)
+0.3
-0.1
+0.1
-1.2
N.D.
stress
Benzethonium chloride 0.025 mM
-0.3
-0.1
+0.4
-0.7
N.D.
stress
Cisplatin 0.006 mg/ml
-0.0
-0.0
-1.1
+0.5
N.D.
nitrogen source
nitrite (N)
+0.0
+0.1
+0.3
-0.9
N.D.
motility
outer cut, LB soft agar motility assay
-0.2
+0.2
+0.6
-0.5
N.D.
stress
acetate 68 mM
-0.5
-0.1
+0.1
+0.7
N.D.
carbon source
L-Ornithine
-0.0
-0.1
-0.6
+1.0
N.D.
carbon source
L-Citrulline
+0.3
-0.2
-0.6
+0.8
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
+0.1
+0.3
+0.7
-0.3
N.D.
stress
Cobalt chloride 0.32 mM
-0.4
+0.1
-0.1
+1.3
N.D.
denitrifying
Nitrate reduction, replicate B
+0.1
+0.2
-0.3
+1.2
N.D.
denitrifying
Nitrate reduction, replicate C
+0.2
+0.1
-0.4
+1.2
N.D.
carbon source
acetate (C)
+0.1
-0.1
+0.3
+1.0
N.D.
motility
outer cut, LB soft agar motility assay
+0.4
+0.6
+0.9
+0.4
N.D.
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