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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_18085 and AO353_18090 are separated by 39 nucleotides
AO353_18090 and AO353_18095 are separated by 45 nucleotides
AO353_18095 and AO353_18100 are separated by 904 nucleotides
AO353_18100 and AO353_18105 are separated by 453 nucleotides
AO353_18085: AO353_18085 - oxidase, at 3,982,543 to 3,983,772
_18085
AO353_18090: AO353_18090 - cytochrome C552, at 3,983,812 to 3,984,426
_18090
AO353_18095: AO353_18095 - hypothetical protein, at 3,984,472 to 3,985,086
_18095
AO353_18100: AO353_18100 - transcriptional regulator, at 3,985,991 to 3,986,623
_18100
AO353_18105: AO353_18105 - AraC family transcriptional regulator, at 3,987,077 to 3,987,667
_18105
Group
Condition
AO353
_18085
AO353
_18090
AO353
_18095
AO353
_18100
AO353
_18105
carbon source
L-Citrulline
-0.2
-0.6
-0.7
-0.4
-0.0
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
+1.0
-2.0
-0.4
+0.0
carbon source
L-Isoleucine (C)
-0.3
-0.0
-0.6
-0.1
-0.1
carbon source
L-Leucine (C)
-0.7
-0.3
-0.2
-0.1
+0.1
carbon source
L-Citrulline
-0.3
-0.5
+0.2
-0.1
-0.2
carbon source
L-Alanine (C)
-0.1
+0.3
-1.0
-0.3
+0.1
carbon source
L-Phenylalanine (C)
-0.1
-0.0
-0.8
-0.1
+0.1
stress
Lomefloxacin 0.001 mM
+0.0
-0.8
+0.2
-0.1
-0.1
carbon source
L-Ornithine
+0.3
-0.3
-0.7
+0.0
-0.0
survival
4C survival; 672 hrs
+0.1
-0.1
-0.9
+0.0
+0.2
stress
Cholin acetate 38 mM
-0.2
+0.3
-0.6
-0.1
-0.1
stress
acetate 17 mM
-0.3
+0.5
-0.6
-0.1
-0.0
stress
Cisplatin 0.006 mg/ml
-0.4
+0.6
-0.2
-0.8
+0.2
nitrogen source
Gly-DL-Asp (N)
-0.1
+0.3
-0.4
-0.2
-0.1
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-0.1
+0.3
-0.7
+0.1
+0.1
carbon source
D-Glucose
+0.2
-0.3
-0.4
-0.1
+0.2
stress
Cholin acetate 10 mM
-0.0
+0.4
-0.9
+0.0
+0.2
stress
Nalidixic 0.004 mg/ml
-0.2
+0.4
-0.5
-0.0
-0.0
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.6
+0.4
-0.3
-0.0
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.1
+0.3
-0.5
-0.0
-0.1
nitrogen source
L-Phenylalanine (N)
+0.0
+0.3
-0.5
-0.2
+0.2
stress
acetate 34 mM
-0.1
+0.3
-0.4
-0.1
+0.3
nitrogen source
Glycine (N)
-0.0
-0.4
+0.5
+0.1
-0.2
stress
Benzalkonium Chloride 0.01 mg/ml
-0.3
+0.4
-0.4
+0.1
+0.2
stress
Spectinomycin 0.1 mg/ml
+0.1
+0.1
+0.6
-0.1
-0.3
stress
Cobalt chloride 0.32 mM
-0.3
+0.1
+0.5
+0.1
+0.1
carbon source
acetate (C)
-0.5
+0.2
+0.5
+0.0
+0.3
carbon source
L-Citrulline
+0.4
+0.0
-0.2
+0.3
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.2
+0.3
+0.3
+0.2
-0.1
motility
outer cut, LB soft agar motility assay
-0.1
+0.4
+0.1
+0.4
+0.5
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