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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_18005 and AO353_18010 are separated by 171 nucleotides
AO353_18010 and AO353_18015 are separated by 31 nucleotides
AO353_18015 and AO353_18020 are separated by 256 nucleotides
AO353_18020 and AO353_18030 are separated by 1175 nucleotides
AO353_18005: AO353_18005 - allophanate hydrolase, at 3,963,761 to 3,964,678
_18005
AO353_18010: AO353_18010 - hypothetical protein, at 3,964,850 to 3,966,028
_18010
AO353_18015: AO353_18015 - AAA family ATPase, at 3,966,060 to 3,966,905
_18015
AO353_18020: AO353_18020 - cysteine synthase, at 3,967,162 to 3,968,136
_18020
AO353_18030: AO353_18030 - hypothetical protein, at 3,969,312 to 3,969,683
_18030
Group
Condition
AO353
_18005
AO353
_18010
AO353
_18015
AO353
_18020
AO353
_18030
nitrogen source
Gly-Glu (N)
-0.8
-1.6
-1.6
-0.2
N.D.
carbon source
propionate (C)
-1.4
-0.2
-0.1
-0.4
N.D.
carbon source
L-Citrulline
-3.0
+0.6
+0.4
-0.2
N.D.
carbon source
butyrate (C)
-0.1
-1.0
-0.9
+0.0
N.D.
carbon source
L-Valine (C)
-0.2
-0.8
-0.7
-0.2
N.D.
stress
Cisplatin 0.006 mg/ml
-0.6
-0.3
-0.3
-0.7
N.D.
motility
outer cut, LB soft agar motility assay
-1.3
-0.2
+0.4
-0.5
N.D.
stress
Sisomicin 0.008 mg/ml
-0.8
-0.1
-0.4
-0.3
N.D.
nitrogen source
Gly-DL-Asp (N)
-0.4
-0.6
-0.8
+0.2
N.D.
carbon source
propionate (C)
-0.9
-0.1
+0.2
-0.6
N.D.
nitrogen source
L-Citrulline (N)
-0.9
-0.2
-0.1
-0.3
N.D.
pH
Minimal media pH9
-0.5
-0.4
-0.3
-0.2
N.D.
carbon source
L-Isoleucine (C)
-0.7
-0.4
-0.4
+0.1
N.D.
carbon source
D-Trehalose (C)
-1.1
-0.1
+0.1
-0.2
N.D.
carbon source
L-Ornithine
-0.9
+0.2
+0.2
-0.7
N.D.
carbon source
acetate (C)
-1.4
-0.1
+0.4
+0.1
N.D.
pH
Minimal media pH8
-1.0
+0.0
+0.3
-0.3
N.D.
carbon source
D-Glucose
-1.0
+0.4
-0.0
-0.2
N.D.
survival
4C survival; 192 hrs
-1.0
+0.2
+0.1
-0.1
N.D.
carbon source
L-Citrulline
-1.4
+0.2
+0.3
+0.2
N.D.
motility
outer cut, LB soft agar motility assay
-0.8
+0.0
+0.9
-0.8
N.D.
carbon source
L-Citrulline
-1.9
+0.4
+0.9
-0.1
N.D.
stress
Paraquat dichloride 0.032 mg/mL
-0.7
+0.3
+0.4
-0.5
N.D.
denitrifying
Nitrate reduction, replicate B
-0.9
-0.0
+0.3
+0.3
N.D.
carbon source
L-Ornithine
-0.9
+0.7
-0.0
+0.1
N.D.
carbon source
L-Ornithine
-1.0
+0.4
+0.2
+0.2
N.D.
survival
4C survival; 672 hrs
-1.2
+0.3
+0.8
-0.1
N.D.
carbon source
L-Proline (C)
-0.7
+0.2
+0.3
+0.2
N.D.
carbon source
L-Citrulline
-0.8
+0.2
+0.2
+0.5
N.D.
stress
methylglyoxal 0.009 vol%
+0.4
-0.1
-0.4
+0.5
N.D.
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