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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_17990 and AO353_17995 are separated by 65 nucleotides
AO353_17995 and AO353_18000 overlap by 4 nucleotides
AO353_18000 and AO353_18005 overlap by 4 nucleotides
AO353_18005 and AO353_18010 are separated by 171 nucleotides
AO353_17990: AO353_17990 - MFS transporter, at 3,960,953 to 3,962,245
_17990
AO353_17995: AO353_17995 - hypothetical protein, at 3,962,311 to 3,963,063
_17995
AO353_18000: AO353_18000 - allophanate hydrolase, at 3,963,060 to 3,963,764
_18000
AO353_18005: AO353_18005 - allophanate hydrolase, at 3,963,761 to 3,964,678
_18005
AO353_18010: AO353_18010 - hypothetical protein, at 3,964,850 to 3,966,028
_18010
Group
Condition
AO353
_17990
AO353
_17995
AO353
_18000
AO353
_18005
AO353
_18010
carbon source
L-Citrulline
-1.9
-1.6
-1.0
-3.0
+0.6
carbon source
L-Citrulline
+0.0
-0.3
-2.0
-1.9
+0.4
carbon source
L-Citrulline
-0.3
-1.2
-1.0
-1.4
+0.2
stress
Sisomicin 0.008 mg/ml
-0.6
-1.6
-0.5
-0.8
-0.1
carbon source
L-Citrulline
-0.4
-0.6
-1.8
-0.8
+0.2
nitrogen source
Gly-Glu (N)
+0.3
-0.7
-0.3
-0.8
-1.6
motility
outer cut, LB soft agar motility assay
+0.0
-1.3
-0.4
-1.3
-0.2
carbon source
D-Trehalose (C)
-0.1
-1.1
-0.7
-1.1
-0.1
carbon source
L-Ornithine
-1.1
-0.5
-0.8
-0.9
+0.2
carbon source
acetate (C)
+0.1
-0.1
-1.4
-1.4
-0.1
carbon source
D-Glucose
-0.7
-0.9
-0.7
-1.0
+0.4
survival
4C survival; 672 hrs
+0.2
-1.0
-1.3
-1.2
+0.3
carbon source
propionate (C)
+0.3
-1.0
-1.0
-0.9
-0.1
stress
Paraquat dichloride 0.032 mg/mL
-0.4
-1.0
-0.9
-0.7
+0.3
carbon source
propionate (C)
+0.5
-0.6
-0.8
-1.4
-0.2
nitrogen source
L-Lysine (N)
-0.0
-0.5
-0.7
-1.1
-0.0
carbon source
D-Trehalose (C)
+0.1
-0.7
-0.8
-1.0
+0.1
carbon source
D-Glucose
-0.3
-1.6
-0.2
-0.2
+0.2
nitrogen source
L-Lysine (N)
-0.5
-0.8
-0.5
-0.2
+0.0
carbon source
acetate (C)
+0.2
-0.6
-0.8
-0.6
-0.0
carbon source
Carnitine Hydrochloride (C)
+0.1
-0.5
-0.6
-0.5
-0.2
carbon source
L-Isoleucine (C)
+0.1
+0.2
-0.8
-0.7
-0.4
carbon source
L-Valine (C)
+0.2
-0.4
-0.4
-0.2
-0.8
pH
Minimal media pH8
+0.4
-0.6
-0.5
-1.0
+0.0
survival
4C survival; 192 hrs
+0.2
-0.4
-0.5
-1.0
+0.2
carbon source
L-Ornithine
-0.3
-0.4
-0.1
-1.0
+0.4
carbon source
L-Ornithine
-0.2
+0.3
-0.9
-0.9
+0.7
motility
outer cut, LB soft agar motility assay
+0.6
-0.2
-0.6
-0.8
+0.0
nitrogen source
Parabanic Acid (N)
-0.6
-0.6
+0.7
-0.2
+0.1
stress
Lomefloxacin 0.001 mM
-0.8
+0.2
+0.4
+0.8
-0.0
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