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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_17795 and AO353_17800 overlap by 4 nucleotides
AO353_17800 and AO353_17805 overlap by 4 nucleotides
AO353_17805 and AO353_17810 are separated by 120 nucleotides
AO353_17810 and AO353_17815 are separated by 78 nucleotides
AO353_17795: AO353_17795 - methyltransferase, at 3,920,481 to 3,921,191
_17795
AO353_17800: AO353_17800 - sugar translocase, at 3,921,188 to 3,921,574
_17800
AO353_17805: AO353_17805 - hypothetical protein, at 3,921,571 to 3,923,676
_17805
AO353_17810: AO353_17810 - LysR family transcriptional regulator, at 3,923,797 to 3,924,741
_17810
AO353_17815: AO353_17815 - hypothetical protein, at 3,924,820 to 3,926,010
_17815
Group
Condition
AO353
_17795
AO353
_17800
AO353
_17805
AO353
_17810
AO353
_17815
stress
Cisplatin 0.006 mg/ml
+0.1
-0.5
-0.0
-0.6
-0.4
carbon source
L-Leucine (C)
-0.2
-0.1
-0.1
-0.3
-0.4
denitrifying
Nitrate reduction, replicate B
-0.2
-0.4
-0.1
-0.2
+0.1
stress
Benzalkonium Chloride 0.012 mg/ml
-0.2
-0.2
+0.0
-0.5
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
+0.3
-0.1
-0.6
-0.2
carbon source
propionate (C)
+0.1
+0.2
+0.3
-1.6
+0.4
carbon source
L-Alanine (C)
+0.1
-0.0
+0.1
-0.6
+0.1
carbon source
D-Glucose
-0.3
-0.1
-0.1
-0.4
+0.5
stress
Lomefloxacin 0.001 mM
-0.2
-0.6
+0.1
+0.1
+0.2
carbon source
L-Citrulline
-0.1
-0.2
-0.0
-0.4
+0.4
carbon source
acetate (C)
-0.3
-0.3
-0.1
+0.3
+0.2
stress
methylglyoxal 0.009 vol%
-0.2
+0.1
-0.1
+0.4
-0.4
stress
methylglyoxal 0.008 vol%
+0.2
-0.4
+0.1
-0.1
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.2
-0.2
-0.2
+0.5
-0.4
carbon source
propionate (C)
+0.0
+0.3
+0.2
-1.0
+0.3
stress
Tetracycline 0.0016 mg/ml
-0.1
-0.2
-0.1
+0.3
+0.1
carbon source
L-Citrulline
+0.4
-0.1
+0.1
-0.1
-0.2
survival
4C survival; 672 hrs
-0.4
-0.3
+0.2
+0.5
+0.1
pH
Minimal media pH9
+0.2
-0.3
+0.1
+0.2
-0.0
stress
Cisplatin 0.006 mg/ml
+0.1
-0.0
+0.3
+0.3
-0.5
carbon source
L-Aspartic Acid (C)
+0.2
-0.3
+0.1
+0.3
-0.1
stress
Ceftazidime 0.12 mg/ml
-0.1
-0.2
+0.1
+0.6
-0.1
nitrogen source
Parabanic Acid (N)
+0.2
-0.2
-0.0
+0.2
+0.2
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.1
-0.1
+0.0
+0.3
+0.3
stress
Rifampicin 0.005 mg/ml
+0.2
-0.2
+0.0
+0.4
+0.3
stress
Gentamicin 0.006 mg/ml
+0.1
-0.2
+0.1
+0.5
+0.2
carbon source
L-Ornithine
+0.2
+0.0
-0.1
+0.5
+0.2
stress
Spectinomycin 0.15 mg/ml
+0.2
+0.2
-0.1
+0.4
+0.1
stress
Nickel (II) chloride 0.625 mM
-0.1
+0.3
+0.1
+0.2
+0.3
motility
outer cut, LB soft agar motility assay
+0.1
-0.0
-0.1
+1.1
+0.1
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