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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_17765 and AO353_17770 are separated by 12 nucleotides
AO353_17770 and AO353_17775 overlap by 4 nucleotides
AO353_17775 and AO353_17780 are separated by 500 nucleotides
AO353_17780 and AO353_17785 are separated by 548 nucleotides
AO353_17765: AO353_17765 - taurine catabolism dioxygenase TauD, at 3,914,080 to 3,914,949
_17765
AO353_17770: AO353_17770 - hypothetical protein, at 3,914,962 to 3,916,494
_17770
AO353_17775: AO353_17775 - hypothetical protein, at 3,916,491 to 3,917,099
_17775
AO353_17780: AO353_17780 - hypothetical protein, at 3,917,600 to 3,918,523
_17780
AO353_17785: AO353_17785 - hypothetical protein, at 3,919,072 to 3,919,263
_17785
Group
Condition
AO353
_17765
AO353
_17770
AO353
_17775
AO353
_17780
AO353
_17785
carbon source
Tween 20 (C)
-0.2
+0.2
-0.0
+0.1
-1.8
carbon source
m-Inositol (C)
+0.1
+0.1
+0.1
+0.1
-1.9
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.1
+0.2
-0.5
-0.3
-0.7
nitrogen source
L-Glutamic (N)
+0.0
+0.1
-0.1
-0.1
-1.4
carbon source
L-Isoleucine (C)
+0.3
-0.0
-0.2
-0.0
-1.3
motility
outer cut, LB soft agar motility assay
+0.4
-0.1
-0.1
-0.4
-1.0
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
-0.1
+0.1
+0.1
-1.2
stress
Furfuryl Alcohol 0.25 vol%
-0.2
+0.2
-0.2
-0.0
-0.7
carbon source
L-Citrulline
-0.1
+0.1
+0.1
-0.2
-0.9
stress
copper (II) chloride 2.5 mM
+0.0
+0.0
+0.2
-0.1
-1.1
stress
Chloride 500 mM
-0.3
+0.0
-0.0
+0.2
-0.8
carbon source
L-Aspartic Acid (C)
+0.3
+0.1
-0.5
+0.2
-0.8
carbon source
L-Tryptophan (C)
+0.3
+0.1
+0.3
-0.1
-1.3
stress
sodium fluoride 6.25 mM
+0.1
-0.4
+0.2
-0.0
-0.5
stress
methylglyoxal 0.008 vol%
-0.1
-0.1
+0.3
-0.5
-0.2
denitrifying
Nitrate reduction, replicate B
-0.2
-0.2
-0.2
-0.4
+0.6
carbon source
L-Malic (C)
+0.1
+0.2
-0.1
+0.2
-0.6
carbon source
acetate (C)
+0.0
-0.4
+0.6
+0.0
-0.2
lb
LB
-0.2
-0.0
-0.1
+0.2
+0.6
carbon source
Fumarate (C)
+0.3
-0.3
+0.1
-0.1
+0.5
stress
Tetracycline 0.0016 mg/ml
-0.3
+0.2
+0.4
+0.3
-0.1
stress
acetate 68 mM
-0.4
+0.3
+0.1
+0.1
+0.5
carbon source
L-Ornithine
-0.2
+0.0
+0.1
-0.1
+0.9
pH
Minimal media pH9
+0.1
-0.2
+0.3
+0.2
+0.4
stress
Cobalt chloride 0.32 mM
+0.1
-0.2
+0.2
+0.1
+0.7
nitrogen source
Gly-Glu (N)
+0.3
-0.1
+0.1
-0.1
+0.7
carbon source
D-Glucose
+0.1
+0.1
+0.3
-0.1
+0.6
stress
Cisplatin 0.006 mg/ml
-0.1
+0.4
-0.0
+0.4
+0.3
stress
Cisplatin 0.006 mg/ml
+0.3
+0.1
+0.3
-0.0
+0.7
carbon source
L-Ornithine
+0.3
+0.3
+0.1
+0.3
+0.5
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