Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_17655 and AO353_17660 are separated by 107 nucleotidesAO353_17660 and AO353_17665 are separated by 10 nucleotidesAO353_17665 and AO353_17670 are separated by 329 nucleotidesAO353_17670 and AO353_17675 are separated by 17 nucleotides AO353_17655: AO353_17655 - permease, at 3,891,008 to 3,892,078 _17655 AO353_17660: AO353_17660 - peroxiredoxin, at 3,892,186 to 3,892,659 _17660 AO353_17665: AO353_17665 - glycine cleavage system protein R, at 3,892,670 to 3,893,230 _17665 AO353_17670: AO353_17670 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,893,560 to 3,894,438 _17670 AO353_17675: AO353_17675 - hypothetical protein, at 3,894,456 to 3,895,571 _17675
Group Condition AO353_17655 AO353_17660 AO353_17665 AO353_17670 AO353_17675
stress nitrate 200 mM -0.4 -0.3 -0.2 N.D. -2.6
stress Polymyxin B sulfate 4 mg/ml -0.2 -0.2 +0.0 N.D. -3.0
stress Rifampicin 0.005 mg/ml -0.2 -0.2 +0.1 N.D. -2.9
stress perchlorate 75 mM -0.4 -0.3 -0.2 N.D. -1.9
stress methylglyoxal 0.009 vol% -0.3 -0.3 -0.7 N.D. -1.1
carbon source propionate (C) -0.1 -0.3 -0.3 N.D. -1.5
stress Lomefloxacin 0.001 mM -0.6 -0.1 -0.5 N.D. -0.9
pH Minimal media pH9 -0.2 +0.0 +0.2 N.D. -2.1
stress Benzalkonium Chloride 0.012 mg/ml -0.3 -0.3 -0.3 N.D. -1.0
stress Ceftazidime 0.12 mg/ml -0.2 -0.4 +0.1 N.D. -1.5
stress Spectinomycin 0.2 mg/ml -0.2 +0.1 -0.2 N.D. -1.4
survival 4C survival; 360 hrs -0.2 +0.1 -0.6 N.D. -1.1
survival 4C survival; 672 hrs -0.3 +0.1 -0.6 N.D. -0.9
carbon source acetate (C) -0.4 -0.0 +0.1 N.D. -1.4
stress Cholin acetate 38 mM -0.3 +0.0 +0.1 N.D. -1.5
stress Doxycycline hyclate 0.0006 mg/ml -0.5 -0.6 -0.6 N.D. +0.1
carbon source L-Ornithine +0.2 +0.2 +0.4 N.D. -2.1
motility outer cut, LB soft agar motility assay +0.2 -0.5 +0.4 N.D. -1.2
pH Minimal media pH6 +0.1 +0.1 +0.2 N.D. -1.4
carbon source L-Citrulline (C) -0.2 +0.1 +0.4 N.D. -1.3
carbon source D-Glucose +0.1 -0.0 +1.2 N.D. -2.0
carbon source L-Ornithine +0.1 +0.1 +0.5 N.D. -1.2
carbon source L-Citrulline +0.4 +0.4 +0.8 N.D. -1.8
carbon source L-Ornithine +0.3 +0.2 +0.5 N.D. -1.2
anaerobic Anaerobic, acetate donor; nitrate and iron -0.6 -0.3 -0.6 N.D. +1.4
carbon source L-Citrulline -0.5 +0.0 +1.5 N.D. -1.2
carbon source L-Citrulline -0.5 +0.8 +1.0 N.D. -1.3
carbon source L-Citrulline +0.0 +0.4 +1.3 N.D. -1.6
carbon source D-Glucose +0.3 +0.5 +0.9 N.D. -1.5
denitrifying Nitrate reduction, replicate C -0.0 -0.5 -0.2 N.D. +1.4
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