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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_17490 and AO353_17495 overlap by 4 nucleotides
AO353_17495 and AO353_17500 are separated by 6 nucleotides
AO353_17500 and AO353_17505 are separated by 33 nucleotides
AO353_17505 and AO353_17510 are separated by 44 nucleotides
AO353_17490: AO353_17490 - cytochrome C oxidase, at 3,861,113 to 3,862,888
_17490
AO353_17495: AO353_17495 - cytochrome C oxidase subunit III, at 3,862,885 to 3,863,577
_17495
AO353_17500: AO353_17500 - bb3-type cytochrome oxidase subunit IV, at 3,863,584 to 3,864,297
_17500
AO353_17505: AO353_17505 - cytochrome C oxidase subunit IV, at 3,864,331 to 3,864,648
_17505
AO353_17510: AO353_17510 - NAD/FAD-utilizing enzyme apparently involved in cell division, at 3,864,693 to 3,865,253
_17510
Group
Condition
AO353
_17490
AO353
_17495
AO353
_17500
AO353
_17505
AO353
_17510
stress
sodium fluoride 6.25 mM
+0.0
-0.0
-0.5
-0.2
-0.4
nitrogen source
L-tyrosine (N)
-0.0
+0.1
-0.0
-0.6
-0.2
carbon source
L-Citrulline
+0.0
+0.1
-0.0
-0.6
-0.3
stress
Cisplatin 0.006 mg/ml
-0.1
+0.0
-0.5
-0.3
+0.1
nitrogen source
Carnitine Hydrochloride (N)
+0.0
+0.1
-0.2
-0.5
-0.0
carbon source
L-Leucine (C)
-0.1
+0.2
-0.3
-0.2
-0.1
carbon source
L-Ornithine
-0.1
-0.1
-0.3
-0.1
+0.2
nitrogen source
Inosine (N)
+0.1
+0.2
-0.2
-0.1
-0.3
carbon source
D-Serine (C)
+0.1
+0.3
-0.5
+0.0
-0.2
motility
outer cut, LB soft agar motility assay
+0.0
+0.4
-0.2
-0.3
-0.1
carbon source
L-Ornithine
+0.0
-0.1
-0.5
+0.3
-0.0
stress
acetate 68 mM
-0.1
-0.1
-0.5
+0.4
+0.2
carbon source
L-Citrulline
+0.1
-0.1
+0.1
+0.3
-0.4
stress
methylglyoxal 0.009 vol%
+0.1
-0.1
+0.3
-0.3
-0.0
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-0.2
-0.2
+0.4
-0.0
nitrogen source
Ammonium chloride (N)
+0.1
+0.3
+0.0
-0.3
+0.1
lb
LB
-0.0
-0.2
-0.0
+0.3
+0.3
nitrogen source
L-Arginine (N)
+0.0
+0.3
-0.1
-0.2
+0.3
stress
Cisplatin 0.006 mg/ml
-0.1
+0.2
-0.2
+0.4
-0.1
carbon source
acetate (C)
-0.1
+0.4
+0.0
+0.3
-0.3
stress
Lomefloxacin 0.001 mM
-0.0
+0.3
+0.1
-0.3
+0.4
stress
Benzalkonium Chloride 0.012 mg/ml
+0.1
-0.2
+0.0
+0.4
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
+0.2
-0.5
+0.3
+0.5
stress
Tetracycline 0.0016 mg/ml
-0.1
+0.0
+0.6
+0.2
-0.0
stress
Sisomicin 0.008 mg/ml
-0.0
+0.3
+0.2
-0.2
+0.4
stress
acetate 17 mM
-0.0
+0.1
-0.1
+0.3
+0.4
carbon source
L-Valine (C)
-0.0
+0.3
+0.2
+0.2
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.3
+0.2
+0.2
-0.2
+0.4
denitrifying
Nitrate reduction, replicate B
+0.0
-0.1
+0.3
+0.5
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
+0.1
+0.5
+0.2
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