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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_17450 and AO353_17455 are separated by 122 nucleotides
AO353_17455 and AO353_17460 are separated by 424 nucleotides
AO353_17460 and AO353_17465 are separated by 233 nucleotides
AO353_17465 and AO353_17470 are separated by 352 nucleotides
AO353_17450: AO353_17450 - hypothetical protein, at 3,854,138 to 3,854,677
_17450
AO353_17455: AO353_17455 - inclusion body protein, at 3,854,800 to 3,855,303
_17455
AO353_17460: AO353_17460 - hypothetical protein, at 3,855,728 to 3,856,150
_17460
AO353_17465: AO353_17465 - hypothetical protein, at 3,856,384 to 3,856,713
_17465
AO353_17470: AO353_17470 - trans-aconitate methyltransferase, at 3,857,066 to 3,857,836
_17470
Group
Condition
AO353
_17450
AO353
_17455
AO353
_17460
AO353
_17465
AO353
_17470
carbon source
L-Ornithine
-1.1
+0.3
-0.9
+0.1
-0.4
carbon source
D-Glucose
-0.9
+0.2
-0.7
-0.3
-0.1
stress
Cisplatin 0.006 mg/ml
-1.1
-0.3
-0.7
+0.3
-0.0
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
-0.7
-0.1
+0.1
-0.7
carbon source
Ethanol (C)
-0.7
+0.0
-0.8
-0.2
+0.3
carbon source
L-Ornithine
-0.7
+0.3
-0.7
-0.3
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
-0.4
-0.3
-0.3
-0.4
+0.2
carbon source
propionate (C)
+0.3
-0.2
-0.7
-0.4
-0.1
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.4
+0.2
-0.5
-0.4
+0.0
carbon source
L-Citrulline
-1.1
+0.2
+0.3
-0.4
-0.1
carbon source
L-Aspartic Acid (C)
-0.9
-0.0
+0.4
-0.2
-0.2
stress
Tetracycline 0.0016 mg/ml
+0.1
+0.1
-0.9
-0.1
-0.2
nitrogen source
Parabanic Acid (N)
+0.4
-0.4
-0.8
-0.1
-0.0
survival
4C survival; 192 hrs
-1.0
+0.2
-0.2
+0.2
-0.0
stress
Sisomicin 0.008 mg/ml
-0.4
+0.1
-0.6
-0.1
+0.2
carbon source
L-Phenylalanine (C)
-0.8
-0.1
+0.4
+0.1
-0.3
stress
acetate 68 mM
-0.8
-0.0
+0.3
-0.3
+0.0
carbon source
L-Citrulline
-0.8
+0.6
+0.0
-0.6
+0.1
carbon source
Ethanol (C)
-1.1
+0.1
+0.3
+0.0
+0.0
stress
Lomefloxacin 0.001 mM
+0.1
+0.3
-1.0
+0.1
-0.0
carbon source
L-Ornithine
-0.8
+0.3
+0.1
-0.2
+0.3
carbon source
D-Glucose
-0.4
+0.6
-0.5
-0.1
+0.1
carbon source
L-Malic (C)
-0.5
+0.2
+0.4
-0.0
-0.4
stress
Cobalt chloride 0.32 mM
+0.5
-0.1
+0.2
-0.5
-0.2
carbon source
acetate (C)
-0.5
+0.2
+0.2
+0.4
-0.1
carbon source
L-Citrulline
+0.5
+0.3
+0.2
-0.7
-0.2
motility
outer cut, LB soft agar motility assay
+0.1
+0.2
+0.8
-0.3
-0.2
stress
perchlorate 75 mM
+0.5
+0.0
-0.3
+0.5
-0.0
stress
Cisplatin 0.006 mg/ml
+0.9
-0.1
-0.3
+0.5
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+1.9
+0.5
+0.5
-0.3
+0.1
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AO353_17460
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