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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_17335 and AO353_17340 are separated by 105 nucleotides
AO353_17340 and AO353_17345 overlap by 1 nucleotides
AO353_17345 and AO353_17350 are separated by 141 nucleotides
AO353_17350 and AO353_17355 are separated by 107 nucleotides
AO353_17335: AO353_17335 - ACP phosphodiesterase, at 3,831,571 to 3,832,164
_17335
AO353_17340: AO353_17340 - glycerol acyltransferase, at 3,832,270 to 3,833,064
_17340
AO353_17345: AO353_17345 - hemolysin, at 3,833,064 to 3,833,819
_17345
AO353_17350: AO353_17350 - acyl-CoA dehydrogenase, at 3,833,961 to 3,834,842
_17350
AO353_17355: AO353_17355 - serine hydrolase, at 3,834,950 to 3,836,044
_17355
Group
Condition
AO353
_17335
AO353
_17340
AO353
_17345
AO353
_17350
AO353
_17355
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
-1.2
-0.3
+0.2
-0.1
pH
Minimal media pH9
-0.8
+0.2
-0.5
-0.4
-0.2
stress
Tetracycline 0.0016 mg/ml
-0.5
-0.3
-0.5
-0.1
-0.1
stress
copper (II) chloride 2.5 mM
-0.3
-0.7
-0.4
+0.2
-0.1
stress
Cisplatin 0.006 mg/ml
+0.4
-1.3
-0.5
+0.3
-0.1
pH
Minimal media pH9
-0.7
-0.4
+0.2
-0.3
-0.0
stress
Benzalkonium Chloride 0.012 mg/ml
-0.3
+0.1
-0.5
-0.2
-0.3
carbon source
L-Leucine (C)
-0.4
-0.6
-0.0
+0.1
-0.1
stress
Lomefloxacin 0.001 mM
-0.5
-0.2
-0.3
-0.1
+0.2
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
-0.6
-0.3
-0.1
+0.0
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
-0.4
-0.3
-0.2
+0.2
nitrogen source
L-Lysine (N)
+0.2
-0.6
-0.1
+0.2
-0.1
denitrifying
Nitrate reduction, replicate B
+0.2
-0.4
-0.4
-0.1
+0.2
stress
Sisomicin 0.008 mg/ml
-0.6
+0.4
-0.4
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.5
-0.3
+0.2
+0.1
stress
Cisplatin 0.006 mg/ml
+0.6
-0.8
-0.2
-0.1
+0.2
carbon source
L-Citrulline
+0.4
-0.4
-0.2
+0.2
-0.1
carbon source
L-Ornithine
+0.7
-0.3
-0.6
-0.0
+0.1
stress
Cobalt chloride 0.16 mM
+0.2
-0.7
+0.2
+0.0
+0.1
carbon source
L-Ornithine
+0.5
-0.5
-0.1
+0.1
-0.1
carbon source
propionate (C)
-0.7
+0.3
+0.0
+0.1
+0.2
carbon source
L-Citrulline
+0.5
+0.5
-0.4
-0.2
-0.1
stress
Cholin acetate 19 mM
-0.4
+0.7
+0.0
+0.1
-0.0
nitrogen source
Gly-Glu (N)
-0.1
-0.2
-0.4
+1.1
+0.1
denitrifying
Nitrate reduction, replicate C
+0.3
-0.5
+0.4
+0.2
+0.3
carbon source
L-Citrulline
-0.2
+0.6
+0.2
-0.1
+0.1
nitrogen source
Gly-DL-Asp (N)
+0.0
+0.2
-0.3
+0.9
-0.0
carbon source
L-Valine (C)
+0.3
-0.2
+0.5
+0.2
+0.2
stress
Furfuryl Alcohol 0.25 vol%
+1.0
+0.1
+0.0
-0.0
+0.0
motility
outer cut, LB soft agar motility assay
+0.2
+0.7
+0.3
+0.0
+0.1
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