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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_17310 and AO353_17315 are separated by 89 nucleotides
AO353_17315 and AO353_17320 are separated by 65 nucleotides
AO353_17320 and AO353_17325 are separated by 22 nucleotides
AO353_17325 and AO353_17330 are separated by 25 nucleotides
AO353_17310: AO353_17310 - hypothetical protein, at 3,827,841 to 3,828,488
_17310
AO353_17315: AO353_17315 - hypothetical protein, at 3,828,578 to 3,828,781
_17315
AO353_17320: AO353_17320 - NADH:flavin oxidoreductase, at 3,828,847 to 3,829,896
_17320
AO353_17325: AO353_17325 - arabinose transporter permease, at 3,829,919 to 3,831,085
_17325
AO353_17330: AO353_17330 - ArsR family transcriptional regulator, at 3,831,111 to 3,831,416
_17330
Group
Condition
AO353
_17310
AO353
_17315
AO353
_17320
AO353
_17325
AO353
_17330
stress
Furfuryl Alcohol 0.25 vol%
-0.1
N.D.
-3.2
+1.5
N.D.
stress
Tetracycline 0.0016 mg/ml
-0.7
N.D.
-0.1
-0.3
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
-0.3
N.D.
-0.4
-0.1
N.D.
stress
Benzalkonium Chloride 0.01 mg/ml
-0.3
N.D.
-0.2
-0.3
N.D.
stress
Furfuryl Alcohol 0.0625 vol%
-0.2
N.D.
-1.2
+0.7
N.D.
stress
Lomefloxacin 0.001 mM
-0.5
N.D.
+0.1
-0.4
N.D.
stress
Fusidic 0.125 mg/ml
-0.3
N.D.
+0.1
-0.5
N.D.
stress
Furfuryl Alcohol 0.125 vol%
-0.2
N.D.
-0.9
+0.4
N.D.
stress
Cholin acetate 38 mM
-0.1
N.D.
-0.1
-0.4
N.D.
carbon source
D-Alanine (C)
-0.3
N.D.
-0.0
-0.2
N.D.
stress
syringaldehyde 5 mM
-0.2
N.D.
-0.1
-0.3
N.D.
stress
Doxycycline hyclate 0.0002 mg/ml
-0.3
N.D.
-0.2
-0.1
N.D.
motility
outer cut, LB soft agar motility assay
+0.0
N.D.
-0.4
-0.2
N.D.
carbon source
propionate (C)
+0.1
N.D.
+0.1
-0.6
N.D.
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.5
N.D.
+0.4
-0.3
N.D.
stress
Cisplatin 0.006 mg/ml
-0.2
N.D.
-0.6
+0.4
N.D.
carbon source
acetate (C)
-0.4
N.D.
+0.3
-0.1
N.D.
carbon source
L-Valine (C)
-0.2
N.D.
+0.2
-0.2
N.D.
motility
outer cut, LB soft agar motility assay
+0.3
N.D.
+0.1
-0.5
N.D.
nitrogen source
L-Arginine (N)
+0.2
N.D.
+0.1
-0.3
N.D.
stress
Paraquat dichloride 0.032 mg/mL
-0.3
N.D.
+0.1
+0.3
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
N.D.
-0.1
+0.4
N.D.
carbon source
L-Citrulline
-0.2
N.D.
+0.1
+0.3
N.D.
stress
Sisomicin 0.008 mg/ml
-0.2
N.D.
+0.3
+0.3
N.D.
carbon source
L-Citrulline
-0.1
N.D.
+0.2
+0.5
N.D.
stress
nitrate 200 mM
+0.2
N.D.
+0.1
+0.2
N.D.
carbon source
L-Ornithine
-0.1
N.D.
-0.2
+0.9
N.D.
carbon source
L-Ornithine
+0.1
N.D.
-0.0
+0.8
N.D.
carbon source
L-Ornithine
-0.0
N.D.
-0.1
+1.2
N.D.
carbon source
L-Ornithine
+0.0
N.D.
-0.1
+1.3
N.D.
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